RetrogeneDB ID: retro_meug_263

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_8334:19915..20437(+)
• Located in intron of: ENSMEUG00000003088

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DTNBP1
• Ensembl ID: ENSMEUG00000014875
• Aliases: None
• Description: dystrobrevin binding protein 1 [Source:HGNC Symbol;Acc:17328]

Sequence

>retro_meug_263
GAGCTAGATGCAGAACACACTCAGAAGGTGCTCGATATGGAACACAGCCAACAGCTGAAACTAAAGGAGCGCCAGAAATT
CTTTGAAGAAGCCTTCCAGCAGGACATGGAGCAGTACCTTTCCACAGGCTACCTGCAGATAGCTGAGCGACGAGAGCCTA
TAGGCAGCATGTCATCCATGGAAGTCAATGTAGACATGCTAGAACAGATGGACCTAATGGATATGTCTGATCAAGAGGCC
CTGGATGTCTTTCTGAACTCTGGAGAAGGCAATGCGCTCTCTCCTGGATTAGGGCCTGATGCCAGTACTTGTCAGAATGA
AATAAGCCTTGAGGTTCCCAACCACTCTGCATCTCAGAGCAAACCGTCTTCCTTATCCTCAGTCTGCACTGACTCTGTCA
CCCAAGAGAATAGTGAAAGTGGAGAGTCCCCTGTTGTTCAGTCTGATGAGGAAGAAGTCCAGGTGGACACTGCTCTGGCT
ACTATAAAGGCCAGGTCAGATGTCCGTGATGAAAGTGACTCT

Alignment

ORF - retro_meug_263 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.43 %
• Parental protein coverage: 50.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM
          ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM
Retrocopy ELDAEHTQKVLDMEHSQQLKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQM

Parental  DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES
          DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES
Retrocopy DLMDMSDQEALDVFLNSGEGNALSPGLGPDASTCQNEISLEVPNHSASQSKPSSLSSVCTDSVTQENSES

Parental  GESPVVQSDEEEVQVDTALATIKARSDVSDESDS
          GESPVVQSDEEEVQVDTALATIKARSDV.DESDS
Retrocopy GESPVVQSDEEEVQVDTALATIKARSDVRDESDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_263 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_263 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014875	2 retrocopies	retro_meug_1956, retro_meug_263 ,
Myotis lucifugus	ENSMLUG00000016460	1 retrocopy	retro_mluc_1326,