RetrogeneDB ID: retro_meug_223

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_661:24972..25216(+)
• Located in intron of: ENSMEUG00000015849

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MPV17L2
• Ensembl ID: ENSMEUG00000016379
• Aliases: None
• Description: MPV17 mitochondrial membrane protein-like 2 [Source:HGNC Symbol;Acc:28177]

Sequence

>retro_meug_223
GTGGCAACCCCTATCCTGGGCAGGTGATATTTTCTGGCACTGGGCTGCTTAGAGGGCCAGAGCCTCGACACAACTTGCCA
GGAGCTGCAGGACAAGTTGTGAGAGTTCTACAAGGCTGATTGGTGTGTGCTGCCAGCAGCCCAGCTAGTGAACTTCCTTT
ACGTGCCTACCCATTAGGGCATGTATGTATGTAAACAGTGTGACATTGGGCTGGGATACCTACCTCTCCTACACAAAGCA
TCAA

Alignment

ORF - retro_meug_223 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.71 %
• Parental protein coverage: 64.8 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VASPVLGVWYFLGLGCLEGQSLDTSCQELQDKFWEFYKADWCVWPAAQLVNFLYVPTH-YRVMYVNSVTL
          VA.P.LG..YFL.LGCLEGQSLDT.CQELQDK..EFYKADWCV.PAAQLVNFLYVPTH....MYVNSVTL
Retrocopy VATPILGR*YFLALGCLEGQSLDTTCQELQDKL*EFYKADWCVLPAAQLVNFLYVPTH>RACMYVNSVTL

Parental  GWDTYLSYLKHR
          GWDTYLSY.KH.
Retrocopy GWDTYLSYTKHQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_223 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_223 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000027644	1 retrocopy	retro_acar_180,
Bos taurus	ENSBTAG00000025788	1 retrocopy	retro_btau_306,
Callithrix jacchus	ENSCJAG00000014104	1 retrocopy	retro_cjac_4063,
Echinops telfairi	ENSETEG00000013840	1 retrocopy	retro_etel_1446,
Macropus eugenii	ENSMEUG00000016379	2 retrocopies	retro_meug_223 , retro_meug_943,
Macaca mulatta	ENSMMUG00000005025	1 retrocopy	retro_mmul_2493,
Nomascus leucogenys	ENSNLEG00000005944	1 retrocopy	retro_nleu_2666,
Pteropus vampyrus	ENSPVAG00000002028	1 retrocopy	retro_pvam_1254,