RetrogeneDB ID: retro_meug_2099

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold90377:8058..8751(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RUVBL2
• Ensembl ID: ENSMEUG00000000069
• Aliases: None
• Description: RuvB-like 2 (E. coli) [Source:HGNC Symbol;Acc:10475]

Sequence

>retro_meug_2099
ATGACTGAATCCCTCACCAAGGAGAAGGTCCAAGCAGGAGACATCATCATGATCGATAAGGCCATGGGGAAGATGTCAAA
TCTGGCTCGCTCCTTTACCTGTGTCCAGGACTATGATGCCGTGGACTCCCAGACCAAGTTTGTTCAGTGCCCATGTAGGG
AACTTCAGAAGAGAAAGGAGGTTGTGCACACAATGTCTCTCCATGAGACGGACATCATTACCTTGTGCACACAGGGCTTC
CTGGGAGCTCTCCTCAGGTGACACAGGGGAGATCAAGTTGGAGGTGCAGGTGCAGATCAGCGATAAGGTGGCCAGATGAC
AAGAGGAGGGTACAGTGGAGATCATCCCAGGAGTTCTGTTCATAGGTGAAGTCTACATGCTTGATATTGAGAATTTCTTT
TTCCTCATTCGGGTACTAGAGAGGAACATGGCTCCCATGCTCATCATGGCCACCAACCGCAGCATCACTAGAATCCAGGA
GACCAGCTACCAGAGCCCCCACAGGATTCCCATTGACCTCTAAACTGGTTGCTCATTGTCTCTATCACTCTTTATAGTGA
GAAGGACACAAAGCAGATTCTCTGAATCGAGTGTGAGAAGGAAGGTGTGGAGATGAAAGAAGATTCTTATGTGGTGCTGA
CCTGGATTGGGCTGGAGACTTCTCTGAGCTACTCCATCCAGCTTATCACAGCC

Alignment

ORF - retro_meug_2099 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.39 %
• Parental protein coverage: 52.5 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MIESLTKEKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEI
          M.ESLTKEKVQAGD.I.IDKA.GK.S.L.RSFT...DYDA..SQTKFVQCP..ELQKRKEVVHT.SLHE.
Retrocopy MTESLTKEKVQAGDIIMIDKAMGKMSNLARSFTCVQDYDAVDSQTKFVQCPCRELQKRKEVVHTMSLHET

Parental  DVINSRTQGFLA-LFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRAL
          D.I...TQGFL..L.SGDTGEIK.EV..QI..KVA...EEG..EIIPGVLFI.EV.MLDIE.F.FL.R.L
Retrocopy DIITLCTQGFLG>LSSGDTGEIKLEVQVQISDKVAR*QEEGTVEIIPGVLFIGEVYMLDIENFFFLIRVL

Parental  ESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIISTTPYSEKDTKQILRIRCEEEDVEMNED
          E..MAP.LIMATNR.ITRI..TSYQSPH.IPIDL.L..LLI.S.T.YSEKDTKQIL.I.CE.E.VEM.ED
Retrocopy ERNMAPMLIMATNRSITRIQETSYQSPHRIPIDL<LNWLLIVSITLYSEKDTKQIL*IECEKEGVEMKED

Parental  AYTVLTRIGLETSLRYAIQLITA
          .Y.VLT.IGLETSL.Y.IQLITA
Retrocopy SYVVLTWIGLETSLSYSIQLITA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2099 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2099 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000222	2 retrocopies	retro_cjac_329, retro_cjac_4119,
Homo sapiens	ENSG00000183207	1 retrocopy	retro_hsap_4755,
Gorilla gorilla	ENSGGOG00000009245	1 retrocopy	retro_ggor_2961,
Macropus eugenii	ENSMEUG00000000069	1 retrocopy	retro_meug_2099 ,
Macaca mulatta	ENSMMUG00000003915	1 retrocopy	retro_mmul_2536,
Nomascus leucogenys	ENSNLEG00000004769	1 retrocopy	retro_nleu_1251,
Otolemur garnettii	ENSOGAG00000007519	2 retrocopies	retro_ogar_2473, retro_ogar_3246,
Pongo abelii	ENSPPYG00000010225	1 retrocopy	retro_pabe_3701,
Pan troglodytes	ENSPTRG00000011270	1 retrocopy	retro_ptro_3168,