RetrogeneDB ID: retro_meug_2094

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold89794:8828..9360(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GALM
• Ensembl ID: ENSMEUG00000015006
• Aliases: None
• Description: galactose mutarotase (aldose 1-epimerase) [Source:HGNC Symbol;Acc:24063]

Sequence

>retro_meug_2094
GCTTTGGTGACCAGGAGTGTGTTTGGAGGCCTCTCCAGTGGAGGAGGGATTTTAGAGAAGTTCCATCTATAGTCAGACCA
GCTGAGGGTGGAAATTGTCTCCCTGGACTGCACCGTCACCTCTTTGGAGTTGAAAGACAGGGATGGGAAATTCTCAGATG
TGGTGCTGGACTTTGCTAAGCTGGAAGGGTATATCAAGAAGCATCCATACTTTGGAGCAGTAGTTGGAAAAGTGGCCAGT
GGAATTGCCAAAGGAACATTCATCATGGATGGGATAGAATACAAGTTGGCCATTAACAATGGACCTCCTAGTCTACATGG
AGGACTAAACAGCCTTGACAAGGTCTTTTGGACCACTTATGTGCTACCAAATGGTGTTCAGTTCTCCCGAATCAGTCCAG
ATGAAGAGGAAGGCTATCCTGGCAAGTTGAAAGTTTGGATCATGTACACACTTGATGGGGGGGCAGTTCATAGTAAATTA
CAAAACCCAGACCAGTAGCACTACACCAGTCAGTCTGACGAACTACTTGTTT

Alignment

ORF - retro_meug_2094 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.28 %
• Parental protein coverage: 51.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASVTRSVFGDLPDGAGMVEKFHLRSDQLRLEIISLGCTITALEVKDRDGKFSDVVLGFSELEGYLKKHPY
          A.VTRSVFG.L..G.G..EKFHL.SDQLR.EI.SL.CT.T.LE.KDRDGKFSDVVL.F..LEGY.KKHPY
Retrocopy ALVTRSVFGGLSSGGGILEKFHL*SDQLRVEIVSLDCTVTSLELKDRDGKFSDVVLDFAKLEGYIKKHPY

Parental  FGAVVGRVANRIAKGTFTIDGKEYKLAINNGPNSLHGGLKGFDKVLWTPQVLPNGVQFSRISPDGEEGYP
          FGAVVG.VA..IAKGTF..DG.EYKLAINNGP.SLHGGL...DKV.WT..VLPNGVQFSRISPD.EEGYP
Retrocopy FGAVVGKVASGIAKGTFIMDGIEYKLAINNGPPSLHGGLNSLDKVFWTTYVLPNGVQFSRISPDEEEGYP

Parental  GELKVWVTYTVD-GGQLIVNYRAQTSSTTPISLTNHSY
          G.LKVW..YT.D.GGQ.IVNY..QTSSTTP.SLTN...
Retrocopy GKLKVWIMYTLD>GGQFIVNYKTQTSSTTPVSLTNYLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2094 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2094 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015006	1 retrocopy	retro_meug_2094 ,
Myotis lucifugus	ENSMLUG00000015685	1 retrocopy	retro_mluc_1049,
Macaca mulatta	ENSMMUG00000008248	1 retrocopy	retro_mmul_761,
Oryctolagus cuniculus	ENSOCUG00000006325	1 retrocopy	retro_ocun_1151,
Sus scrofa	ENSSSCG00000008486	1 retrocopy	retro_sscr_147,
Tupaia belangeri	ENSTBEG00000003695	2 retrocopies	retro_tbel_2040, retro_tbel_2771,