RetrogeneDB ID: retro_meug_208

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_6165:52170..52648(-)
• Located in intron of: ENSMEUG00000009149

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BCAP31
• Ensembl ID: ENSMEUG00000007345
• Aliases: None
• Description: B-cell receptor-associated protein 31 [Source:HGNC Symbol;Acc:16695]

Sequence

>retro_meug_208
GTGCTTCTCACTGATGCTGTGAAGTATGGTGATGTGACAGAGAAGGTGAACCTCTAGAATAACCCTGGGGCTGTGGAACA
CTTCCACATGAAGTTGTTTCGAGCCCAGAGGAACCTCCACATCGCTGGCTTCTCTCTGCTGCTGCCTTTCCTGTTCAGAC
GCCTGGTGACCCTTTTCTCCCAGCAGGTCACACTGTTGGCCTCCAATGAAACCTTTATAAAACAGGCTGAGGGTGCTGGC
AAAGCCGCCAAGAAATACATAGAAGAAAATGGCAAGCTGAAGGAGAAAACTGGCACCAACAGCAGTAAATTGGACCTGAA
TGATGGTGTGCTAGCAGAGAACAAAAACCTAAAGACTGAACTTAAGAAACTCATGGAGGAACTGGCCATCAGCAAGTGCA
GCCTGAAAGAGCAGAAAATGAGGCTCTGGCCATGCTTGAGCAGTCAAAGGGCTGCCCAAAGAATACTACTGTCTACTA

Alignment

ORF - retro_meug_208 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.31 %
• Parental protein coverage: 67.49 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LLLIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLHIAGFSLLLSFLLRRLVTLISQQATLL
          .LL.DAV....KY.DVTEKVNL.NNPGA.EHFHMKLFRAQRNLHIAGFSLLL.FL.RRLVTL.SQQ.TLL
Retrocopy VLLTDAV----KYGDVTEKVNL*NNPGAVEHFHMKLFRAQRNLHIAGFSLLLPFLFRRLVTLFSQQVTLL

Parental  ASNEAFKKQAEGASEAAKKYIEENDKLKKEAGTNGGKLDLNDDVLAENKNLKAELKKLTEELDISKRNL-
          ASNE.F.KQAEGA..AAKKYIEEN.KLK...GTN..KLDLND.VLAENKNLK.ELKKL.EEL.ISK..L.
Retrocopy ASNETFIKQAEGAGKAAKKYIEENGKLKEKTGTNSSKLDLNDGVLAENKNLKTELKKLMEELAISKCSL<

Parental  ERAENEALAMRKQS-KGLTKEYDRLL
          ERAENEALAM..QS.KGL.KEY..LL
Retrocopy ERAENEALAMLEQS<KGLPKEYYCLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_208 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_208 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019245	1 retrocopy	retro_cfam_482,
Callithrix jacchus	ENSCJAG00000011348	1 retrocopy	retro_cjac_2552,
Echinops telfairi	ENSETEG00000008662	1 retrocopy	retro_etel_1522,
Macropus eugenii	ENSMEUG00000007345	3 retrocopies	retro_meug_1017, retro_meug_1867, retro_meug_208 ,
Monodelphis domestica	ENSMODG00000008300	2 retrocopies	retro_mdom_1110, retro_mdom_24,
Sarcophilus harrisii	ENSSHAG00000009111	1 retrocopy	retro_shar_31,