RetrogeneDB ID: retro_meug_1979

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold76288:4152..4415(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000013888
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000014912
• Aliases: None
• Description: None

Sequence

>retro_meug_1979
GTGAACATCCCTAAAACTTGCAGAACTTTCTGCAAAAAGTGCAGCAAGCAACAGCCTCACAAAGTGCCACAGTTACAAGA
AAGGCAAGGATTCCTTGAATGCACAGGGTAAAAGGCAATACGATCTGAAGCAAGCAGAGTGGCTATAGTGGTCAAACAAA
ACCAATTTTCCAGAAAAAGGCAAAGACCACAAAAAAGACTGTACTGAGGCTTGAACATGTGGGACCCACCTGCAGGTCTA
AGAGGATGCTTGCCCTTAAGAGG

Alignment

ORF - retro_meug_1979 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.66 %
• Parental protein coverage: 81.9 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VNVPKTCRTFCKKCGKHQPHQVTQ-YKKGKDSLYAQGKRRYDLKQSDY-GGQTKPIFQKKAK-TTKKIVL
          VN.PKTCRTFCKKC.K.QPH.V.Q.YKKGKDSL.AQGKR.YDLKQ........K..F..K.K.TTKK.VL
Retrocopy VNIPKTCRTFCKKCSKQQPHKVPQ>YKKGKDSLNAQGKRQYDLKQAEWL*WSNKTNFPEKGK>TTKKTVL

Parental  RLERVEPNCRSKRMLAIKR
          RLE.V.P.CRSKRMLA.KR
Retrocopy RLEHVGPTCRSKRMLALKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1979 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1979 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000008503	1 retrocopy	retro_acar_98,
Macropus eugenii	ENSMEUG00000014912	6 retrocopies	retro_meug_1056, retro_meug_1381, retro_meug_1610, retro_meug_1979 , retro_meug_2185, retro_meug_489,
Monodelphis domestica	ENSMODG00000025578	2 retrocopies	retro_mdom_1878, retro_mdom_971,
Sarcophilus harrisii	ENSSHAG00000013479	1 retrocopy	retro_shar_467,