RetrogeneDB ID: retro_meug_1796

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold5954:32355..32703(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006905
• Aliases: None
• Description: None

Sequence

>retro_meug_1796
CTGCATGCTCTGGGTACCAACCCCGCTGATGCAGAGGTCAAGAAAGTTCTGGGAAACCCCAGCAATGAAGAGAAGAATGC
CAAAAAAATTGAGTTTGAGCAGTTCCTGCCCATGATGCAGGCCATTTCCAACAACAAGGACCAGGGAAGTTATGAAGACT
TCGTTGAGGGGCTGCGTGTCTTTGACAAAGAGGGCAATGGCATGGTCATGGGTGCTGAACTTGACAACGTGCTCGCTACC
CTGGGTGAAAAGATGAAGGAAGAGGAGGTGGAAGCCCTATTGGCAGGTCAAGAAGACTCCAATGGCTGCATCAATTATCA
AGCCTTTGTCAAACACATCATGTCCATA

Alignment

ORF - retro_meug_1796 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.38 %
• Parental protein coverage: 61.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LRALGTNPTNAEVKKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQGTYEDFVEGLRVFDKEGNGTVM
          L.ALGTNP..AEVKKVLGNPSNEE.NAKKIEFEQFLPMMQAISNNKDQG.YEDFVEGLRVFDKEGNG.VM
Retrocopy LHALGTNPADAEVKKVLGNPSNEEKNAKKIEFEQFLPMMQAISNNKDQGSYEDFVEGLRVFDKEGNGMVM

Parental  GAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMSI
          GAEL..VLATLGEKMKEEEVEAL.AGQEDSNGCINY.AFVKHIMSI
Retrocopy GAELDNVLATLGEKMKEEEVEALLAGQEDSNGCINYQAFVKHIMSI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1796 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1796 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008609	2 retrocopies	retro_chof_1485, retro_chof_2467,
Macropus eugenii	ENSMEUG00000001272	1 retrocopy	retro_meug_2172,
Macropus eugenii	ENSMEUG00000006905	5 retrocopies	retro_meug_1796 , retro_meug_21, retro_meug_537, retro_meug_87, retro_meug_914,
Mus musculus	ENSMUSG00000061816	1 retrocopy	retro_mmus_973,
Sorex araneus	ENSSARG00000002568	1 retrocopy	retro_sara_196,
Tarsius syrichta	ENSTSYG00000007599	3 retrocopies	retro_tsyr_1284, retro_tsyr_1539, retro_tsyr_2003,