RetrogeneDB ID: retro_meug_1783

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold58889:9464..10216(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TUFM
• Ensembl ID: ENSMEUG00000011131
• Aliases: None
• Description: Tu translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:12420]

Sequence

>retro_meug_1783
ATGTTATGGAGTCTGGTTGTTGAGACCTAGAGGACTTATGTGAGAGATCAAGCCCATGTTAATGTTGGCACTATTTGCTA
TGTGGATCATGACAAGACTACACTGACAGCAGCATTCACCAAGATTCTGGATGGTTGGACCGAGTTTAAGAAATACAAGG
AGATTGACAATTCACTAGAGGAACAATTCCGAGGTATCACGATCAATGCAGCCCACATGGAATGTAGTACAGCCACTTGA
AACTATAGTTGTACTGAATGTCCTGGGCATGCTGACTATGTCAAGAACATGATCGCTGCCACAGCCCCATTGGATGACTG
CATTCTGCTGGTGGCAGTTAATGATGGCCCCATACCCCAGACAAGGGAGCACCTGCTTCTTGCCAAAGAAATGTTTGTGG
AGCACATGGCAGTGTTTGTGAACAAGGCAGATGCTTTGGAGCACAATGAAATGGTAGAGCCAGTAGAACTAGAAATATAG
GAGCAGGTCACTGAGTTTGGTTATGGTGGGGAGAAGACTCCTGTCATTGTTGGTTCTGCTCTCTGTGCCCTTGAGTCATG
GCAACCAGAGTTAAGGGTGAATGCTATAATGAAACTTCTTGATGCCGTGGTCACTCATATTCCTGTGCCCACTTGGGATC
TAGAGAAGCCCTTCCTACTGGCTTTGGAGTTTGTTTATTCCATCCCTGCTCATGGAGCAGTGGTCACAGGTGCTCTGGAG
ATAGGACTGTGAAGAAAGGAGATGGATGTGAA

Alignment

ORF - retro_meug_1783 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.05 %
• Parental protein coverage: 73.33 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LLRGLAVEAKKTYVRDKPHINVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITI
          .L..L.VE...TYVRD..H.NVGTI..VDH.KTTLTAA.TKIL...G...FKKY.EIDN..EE..RGITI
Retrocopy MLWSLVVET*RTYVRDQAHVNVGTICYVDHDKTTLTAAFTKIL--DGWTEFKKYKEIDNSLEEQFRGITI

Parental  NAAHVEYSTATRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAKQIGVEHMVV
          NAAH.E.STAT..Y..T.CPGHADYVKNMI..TAPLD.CIL.VA.NDGP.PQTREHLLLAK...VEHM.V
Retrocopy NAAHMECSTAT*NYSCTECPGHADYVKNMIAATAPLDDCILLVAVNDGPIPQTREHLLLAKEMFVEHMAV

Parental  FVNKADAVQDNEVIELVELEVRELLTEFGYDGEKTPVIVGSALCALEQRQPELGVNSVMKLLDAVDTHIP
          FVNKADA...NE..E.VELE..E..TEFGY.GEKTPVIVGSALCALE..QPEL.VN..MKLLDAV.THIP
Retrocopy FVNKADALEHNEMVEPVELEI*EQVTEFGYGGEKTPVIVGSALCALESWQPELRVNAIMKLLDAVVTHIP

Parental  VPARDLEKPFLLPIESVYSIPGRGTVVTGTLERG-TVKKGDECE
          VP..DLEKPFLL..E.VYSIP..G.VVTG.LE.G.TVKKGD.CE
Retrocopy VPTWDLEKPFLLALEFVYSIPAHGAVVTGALEIG<TVKKGDGCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1783 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1783 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016474	1 retrocopy	retro_dord_278,
Homo sapiens	ENSG00000178952	1 retrocopy	retro_hsap_1816,
Macropus eugenii	ENSMEUG00000011131	1 retrocopy	retro_meug_1783 ,
Monodelphis domestica	ENSMODG00000015564	1 retrocopy	retro_mdom_384,
Mus musculus	ENSMUSG00000073838	1 retrocopy	retro_mmus_10,
Ornithorhynchus anatinus	ENSOANG00000013114	1 retrocopy	retro_oana_36,
Oryctolagus cuniculus	ENSOCUG00000002683	1 retrocopy	retro_ocun_333,
Pan troglodytes	ENSPTRG00000007939	1 retrocopy	retro_ptro_1174,
Rattus norvegicus	ENSRNOG00000018604	1 retrocopy	retro_rnor_1134,
Vicugna pacos	ENSVPAG00000009541	1 retrocopy	retro_vpac_346,
Drosophila melanogaster	FBgn0033184	1 retrocopy	retro_dmel_52,