RetrogeneDB ID:

retro_meug_1701

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold5358:16429..17730(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMEUG00000007460
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:ENO3
Ensembl ID:ENSMEUG00000007915
Aliases:None
Description:enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354]


Retrocopy-Parental alignment summary:






>retro_meug_1701
ATGTCTATTTACAAGATCCAGGCAAGAGAGATCTTTGACTCTTGTAGAAATCCTCCTGTTGAAGTTGATCTCTACACTGA
AAAAGGTCAGTTCCGAGCTACTGTGCCCAGTGATGCTTCTACTGGTATCCATGAAGCCCTGGAGCTCCAAGACAATGATA
AGACCCGCTACATGGGGAAAGGTGTCTCAAAAGCGGGTGAGCACATCAATAAAACTATTGCCCCAACCCTGATTAGCAAG
AAATTGAATGTTGTGGAGCAAGAGAAGATCAACAAATTGATGATAGAGATGGATGGCACTGAAAATAAATCTAAATTTGG
TGCAAATGCCATTTTGGGAGTGTCTCTGGCTGTTTGTAAGGCCGGAGCTGCTGAGAAAGATGTCTCCCTGTACCATCACA
TCGCTGACCTTGCAGGCAACATTGAAGTCAACCTGCCCATTCCAGCCTTCAGCATGATCAATGGTGGCTCCCATGCTGGT
AACAAGTTGGCCATGCAGGAGTTCATGATCCTCCTTGTTGGAACAGCAAACTTTAAGAAGGCCATGAGCATTGGAGGTGA
GGTCTATCACAACTTGAAGAGTGTGATTAAGCAGAAATAAGGACAAGATGCCACCAATGTAGGGGATGAGGGTGGCTTTG
CTCCTAACATCACAGAGAATAAAGAAGCTCTGGACCTGCTAAAGGATGCTATTGGTAAGGCTGGCTACACTGATAAGGTC
GTAATTGGCATGGATGTTGCTGCCTCTGAATTCTTCTGATCTGGGAAATATGACTTAGACTTCAAGTCTCCTGATGATTC
CAGCAGATACATCTCCCCTTCTAGCTTGGGGACCTCTACAAGAGCTTCATCAAGGATTACCCAGTGGTGTCTATTGAAGA
TCCCTTTCACCAGGATGATTGGGAAGCTTGGAAAAATTTCACTGCTACTGCCATCATCCAGGTGGTAGGAGATGATCTCA
CAGTGACCAACCCCAAGGGAATTGAAAAGGCTGTGAATGAGAAGGCCTGCAATTGCCTCCTACTCAAAGTGAAACAGATT
GGCGCTGTGACTGAATCTCTCCAGACTTGCAAGCTGGCCCAATCCAATGGGTGGGAAGTAATGGTTTCCCACCGTTCTGG
GGAGACTGAAGATATCTTCACTGTAGACCTGGTGGTGGGTCTCTGTACTGGGCAAATCAAGACTGGTGCCCCCTGCTGAT
CTGAGTGTCTGGCCAAGTATAATCAGCTTCTCAGAATTGAGGAAGAGCTGGGCAGCAAGGCTAAATTTGCTGGAAGGAAC
TTCAGAAACCCTCGGGCCAAG

ORF - retro_meug_1701 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.1 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLXXXXXXX
M...KI.AREI.DS..NP.VEVDL.T.KG.FRA.VPS.ASTGI.EALEL.D.DK.RY.GKGV........
RetrocopyMSIYKIQAREIFDSCRNPPVEVDLYTEKGQFRATVPSDASTGIHEALELQDNDKTRYMGKGVSKAGEHIN
ParentalXXXXXXXXXXKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGN
..........KL.VV.QEK..K.MIE.DGTENKSKFGANAILGVSLAVCKAGAAEK.V.LY.HIADLAGN
RetrocopyKTIAPTLISKKLNVVEQEKINKLMIEMDGTENKSKFGANAILGVSLAVCKAGAAEKDVSLYHHIADLAGN
ParentalPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVGDE
....LP.PAF..INGGSHAGNKLAMQEFMIL.VG.A.F..AM.IG.EVYH.LK.VIK.K.G.DATNVGDE
RetrocopyIEVNLPIPAFSMINGGSHAGNKLAMQEFMILLVGTANFKKAMSIGGEVYHNLKSVIKQK*GQDATNVGDE