RetrogeneDB ID: retro_meug_1563

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold455915:86..506(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000002809
• Aliases: None
• Description: None

Sequence

>retro_meug_1563
TATATGCTCATTTGGACTGCCACTACCATTGTGTTCTTTGGCCTATTTGGATCTTTTACCCCTTGTCATGGAAGCCCATA
GATGTTAAAACTGTATGGCATGTTTTTGTCCCTGCTGTTCTTGGCTGAGCTGGTGGCTGGCATTTCAGATTTTCCTTTTT
AACATGAGATCAAGGACACCTTCCATTGGACATACCCTGAAACCATGCAGAACTACAAAGGGAATGACAAGAGAAGCCAT
GCAGTGGATGATGTGCAGGAGAATCTGAGCTTCTGTGTTGTTTGAAATTATGCTAACTGGAGCACCAACCCATACTTTAT
GGAAAATGGTATCCCTCCCGGCAGCGGCATGAATATCAGCTATTGTTATCCACTGGATCTCTGCAACATGACTGTGGCTG
CCACTAAAGTCAATCAAAAG

Alignment

ORF - retro_meug_1563 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.57 %
• Parental protein coverage: 56.22 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTEAMQ
          Y.LI.T.TTIV.FGLFG.F..C.GSP.MLKLY.MFLSL.FLAELVAGIS.F.F.HEIKDTF..TY.E.MQ
Retrocopy YMLIWTATTIVFFGLFGSFTPCHGSP*MLKLYGMFLSLLFLAELVAGISDFPF*HEIKDTFHWTYPETMQ

Parental  NYNGNDERSRAVDDVQESLSCCGVQNYTNWSTSPYFVEHGIPPSCCMNTSDCNPQDLRNMTVAATKVNQK
          NY.GND.RS.AVDDVQE.LS.C.V.NY.NWST.PYF.E.GIPP...MN.S.C.P.DL.NMTVAATKVNQK
Retrocopy NYKGNDKRSHAVDDVQENLSFCVV*NYANWSTNPYFMENGIPPGSGMNISYCYPLDLCNMTVAATKVNQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1563 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1563 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000000183	1 retrocopy	retro_cpor_716,
Dipodomys ordii	ENSDORG00000012580	1 retrocopy	retro_dord_708,
Macropus eugenii	ENSMEUG00000002809	1 retrocopy	retro_meug_1563 ,
Mus musculus	ENSMUSG00000058254	1 retrocopy	retro_mmus_157,
Otolemur garnettii	ENSOGAG00000008547	2 retrocopies	retro_ogar_1615, retro_ogar_3124,
Rattus norvegicus	ENSRNOG00000003229	1 retrocopy	retro_rnor_131,