RetrogeneDB ID: retro_meug_1498

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold42704:7182..7656(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RGS2
• Ensembl ID: ENSMEUG00000007191
• Aliases: None
• Description: regulator of G-protein signaling 2, 24kDa [Source:HGNC Symbol;Acc:9998]

Sequence

>retro_meug_1498
ATGCAAAATGCTATGTTCCTGGCTTTCCAATCCAACTGCAGCTCCATGGAGAAAAGTGCTAGTGGCTACCCAAACGGTGA
AGAGAAGAAAGAAAAGATGAAGCAGACAATCATAAAAGACTGGAAGACACGTTTAAGCTGCTTCCTGCAAAACTCATTCA
CACCTGGGAAGTCAAAAGCTAACAAGAAAGGCGAATAGCAAGCTTTTATTAGACCTTCTCCTGAAGAAGCGCAGCTGTGG
TCAGAAACTTTTGATAGCCTTCTTGCCAATAAATTTGGTCTTGCTGAACTTAGGGCTTTTTGAAAATCTGAGTTTTGTGA
AGAAAACATAGAATTCTGGCTGGCCTGTGAAGACTTCAAGAAAACCAAGTCTCCCCAGAAGTTGACCTCCAAGGTCTGGA
AAATTTATACTGACTCCATAGAAAAGGAGGCTCCAAAAGAGATAAATATAGACTTTTAAATTAAAACCATGCTC

Alignment

ORF - retro_meug_1498 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.01 %
• Parental protein coverage: 74.88 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MQSAMFLAFQPNCGSMEKSASSYPKGEEKREKMKRTIIKDWKTRLSYFLQNSSTPEKPKANKKGKQQAFI
          MQ.AMFLAFQ.NC.SMEKSAS.YP.GEEK.EKMK.TIIKDWKTRLS.FLQNS.TP.K.KANKKG..QAFI
Retrocopy MQNAMFLAFQSNCSSMEKSASGYPNGEEKKEKMKQTIIKDWKTRLSCFLQNSFTPGKSKANKKGE*QAFI

Parental  XXXXXEAQLWSETFDELLANKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLNSKARKIYTDFI
          .....EAQLWSETFD.LLANK.GLA..RAF.KSEFCEENIEFWLACEDFKKTKSPQKL.SK..KIYTD.I
Retrocopy RPSPEEAQLWSETFDSLLANKFGLAELRAF*KSEFCEENIEFWLACEDFKKTKSPQKLTSKVWKIYTDSI

Parental  EKEAPKEINIDFQTKTMI
          EKEAPKEINIDF..KTM.
Retrocopy EKEAPKEINIDF*IKTML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1498 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1498 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000034366	1 retrocopy	retro_btau_1349,
Cavia porcellus	ENSCPOG00000011598	1 retrocopy	retro_cpor_1121,
Macropus eugenii	ENSMEUG00000007191	1 retrocopy	retro_meug_1498 ,
Monodelphis domestica	ENSMODG00000012101	1 retrocopy	retro_mdom_690,