RetrogeneDB ID: retro_meug_1474

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold418494:688..1606(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000006275
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: IMPDH2
• Ensembl ID: ENSMEUG00000007895
• Aliases: None
• Description: IMP (inosine 5'-monophosphate) dehydrogenase 2 [Source:HGNC Symbol;Acc:6053]

Sequence

>retro_meug_1474
CTACCTATTGCGAATGAGGATGATGAGATAGCAGCCATCACTGCCCACACAGAACTGAAGAAGAATTGGGACTATCCCCT
GGCATCCAAAGGCACCAAGAAGCAACTTTTGTATAGGGCAGCCATCAGTACCCATGAGGATGGCAAATATGGGCTTGACT
TGCTGGCCCCGACCAGTGTCGATGTGGTCATGGTGGACTCTTCCCAAGGAAACTCCATTTTCCAAATTAACATGATCAAA
TACCTCAAGGAGAAATATAATAACCTTCAGGTTATCAGTGTCAATGTGGTAACAGCTGCACAGGGAAAAAACCTCATTGA
TGCTGGAGTGGATGCCCTGAGGGTTGGCATGAGCAGTAGTTCCATCTGCATCACACAGGAGGTGCTGGCATGTAGGCAGC
CTTGGGCGACAGCTATATGCAAGGTTTCAGAATATGCACAGCGTTTTGGTGTCTCAGTCATTGCAGATAGTGGCATCCAA
AATGTGGGTCACATTGCCAAAGCTCTTGCCCTTGGAGCTTCCACAGTGATGATGGGCTCTCTGTTAGCAGCCACCACAGA
GGCCCCCAGCGAGTACTTCTTCTCTGATGGCATCCAGTTAAAGAAATGCCAGGGCGTGGGCTCCCTGGATGCCATGGACA
AGAACCTAGGCAGCCAGATCTTTTACTTCGGTGAAGCAGACGAAATCAAAGTGGCTCAGGGGATGTCTGGGGCCATGCAG
GACAAAGAGTCCATCCATAAGTTTATCTCCTACTTGATTGCTGACATCCAGCACTCCTGCCAAGATATCAGTGCCAAGAG
TCTAACACAAGTCAGAGCCATGATGTACTCAGGGGAGCAGAAATTTGAGAAGAGGATGTCATCTGCTCAGATGGAAGAAG
GTATCCATGGACTCCATTCATATGAGAAGCGGCTCTTC

Alignment

ORF - retro_meug_1474 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.03 %
• Parental protein coverage: 59.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPIVNEKDELVAIIARTDLKKNRDYPLASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQG
          LPI.NE.DE..AI.A.T.LKKN.DYPLASK.TKKQLL..AAI.THED.KY.LDLLA...VDVV..DSSQG
Retrocopy LPIANEDDEIAAITAHTELKKNWDYPLASKGTKKQLLYRAAISTHEDGKYGLDLLAPTSVDVVMVDSSQG

Parental  NSIFQINMIKYIKEKYSNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVY
          NSIFQINMIKY.KEKY.NLQVI..NVVTAAQ.KNLIDAGVDALRVGM.S.SICITQEVLAC..P.ATA..
Retrocopy NSIFQINMIKYLKEKYNNLQVISVNVVTAAQGKNLIDAGVDALRVGMSSSSICITQEVLACRQPWATAIC

Parental  KVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLD
          KVSEYA.RFGV.VIAD.GIQNVGHIAKALALGASTVMMGSLLAATTEAP.EYFFSDGI.LKK..G.GSLD
Retrocopy KVSEYAQRFGVSVIADSGIQNVGHIAKALALGASTVMMGSLLAATTEAPSEYFFSDGIQLKKCQGVGSLD

Parental  AMDKNLGSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGEL
          AMDKNLGSQ..YF.EAD.IKVAQG.SGA.QDK.SIHKF..YLIA.IQHSCQDI.AKSLTQVRAMMYSGE.
Retrocopy AMDKNLGSQIFYFGEADEIKVAQGMSGAMQDKESIHKFISYLIADIQHSCQDISAKSLTQVRAMMYSGEQ

Parental  KFEKRTSSAQVEGGVHGLHSYEKRLF
          KFEKR.SSAQ.E.G.HGLHSYEKRLF
Retrocopy KFEKRMSSAQMEEGIHGLHSYEKRLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1474 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1474 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007895	3 retrocopies	retro_meug_1474 , retro_meug_858, retro_meug_998,
Macropus eugenii	ENSMEUG00000016082	2 retrocopies	retro_meug_2095, retro_meug_542,