RetrogeneDB ID: retro_meug_139

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_410:63177..63549(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000008257
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POLR2G
• Ensembl ID: ENSMEUG00000011547
• Aliases: None
• Description: polymerase (RNA) II (DNA directed) polypeptide G [Source:HGNC Symbol;Acc:9194]

Sequence

>retro_meug_139
GTGATTGCTGTCACCACCATTGACAACATTGGGGCCGGGGTCATTCAGCCTGGCAGAGTATTTGTGCTGTATCCGGTCAA
GTACAAAGCCATTGTGTTCCGTCCCTTCAAAGGCGAGGTCATGGATGCTGTTGTCACACAGGTCAACAAGGTAGGACTCT
TCACTGAGATTGGACCCATGTCTTGCTTCATCTCTCGCCATTCTGTTCCCTCGGAGATGGAATTTGATCCCAACTCTAAC
CCTCCATGTTACAAAACAGTGGATGAGGATATTGTAATTCAGCAGGACGATGAAATCCACCTAAAGATTGTGGGAACCCG
GGTGGATAAGAACGATATTTTTGCTATTGGCTCCCTGATGGATGACTACCTG

Alignment

ORF - retro_meug_139 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.77 %
• Parental protein coverage: 73.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIP
          VIAVTTIDNIGAGVIQPGR.FVLYPVKYKAIVFRPFKGEV.DAVVTQVNKVGLFTEIGPMSCFISRHS.P
Retrocopy VIAVTTIDNIGAGVIQPGRVFVLYPVKYKAIVFRPFKGEVMDAVVTQVNKVGLFTEIGPMSCFISRHSVP

Parental  SEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL
          SEMEFDPNSNPPCYKTVDEDIVIQQDDEI.LKIVGTRVDKNDIFAIGSLMDDYL
Retrocopy SEMEFDPNSNPPCYKTVDEDIVIQQDDEIHLKIVGTRVDKNDIFAIGSLMDDYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_139 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_139 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000018688	1 retrocopy	retro_cjac_641,
Dipodomys ordii	ENSDORG00000015696	1 retrocopy	retro_dord_574,
Macropus eugenii	ENSMEUG00000011547	1 retrocopy	retro_meug_139 ,
Myotis lucifugus	ENSMLUG00000011039	1 retrocopy	retro_mluc_261,
Pteropus vampyrus	ENSPVAG00000003481	1 retrocopy	retro_pvam_91,