RetrogeneDB ID: retro_meug_138

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_4015:2082..2863(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTG2
• Ensembl ID: ENSMEUG00000002751
• Aliases: None
• Description: mitochondrial ribosome-associated GTPase 2 [Source:HGNC Symbol;Acc:16239]

Sequence

>retro_meug_138
TATGGGCGTAATGGAGATTGCTTCTACATTAGAGTTCCCCCAGGCACACTGGTTAAAGAGGAAAATGAAATTGTAACTGA
TCTTTCTCAGCCAGATGATGAATATATTGCAGCTTTGGGGGGAGCTGGAGGAAAAGGCAATCACTTTTTTTTGCCTAATG
GCAATCAAGCTCCAATAACTTGGACCCCCGGGCAATGGGGTCAAGAAAGAGTACTCTATTTCGAACTGAAGACTATGGCT
CATGCAGAAATGGTGGGATTTCCCAGTGCTGGAAAATCAGCACTTCTTAGAGTGATTTCCAATGCAAAACCTGCTGTGAC
TGCTTATCCATTTACTACTTTAAATTCCCATGTAGGTATTGTTCACTATGAAGTCTACCAACAAGTGGCAGTAGCTGACA
TTCTTGTATATAAGAGGAGCTCATCAAAACAGAGGCTTAGGTTTTGCTTTTCTGAGACACATCGAATGATGCCGCTTTCT
GTTGTTTGTGATGGATCTCTCGATAGCAGAACCATGGACTCAGCTTGAGGATTTAAAATATGAGTTAGAGAAATATGAAG
AAGGCTTGTGAGAGCGACCGCATGCAGTCATTGGAAATAAGATTGACCTTCCTCAATCTAAAGTCAATTTTCCCCAACTT
CAGGCTCGATTAGAACAAAAAATCATCCCCTTGTCAGCATTGACTGGAGAGAACCTAGAGGAATTGCTGTTGCATTTGAA
AGAATTGTATGATGATTATGTAGAGACTGAGTGCAAAGAGGGGCAGGAGCCACTGAATTGG

Alignment

ORF - retro_meug_138 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.82 %
• Parental protein coverage: 90.59 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YGRNGECLYVRVPPGTLVKEENEIVADLSQPGDEYVAALGGAGGKGNRFFLANDNRAPVTCTPGQRGQER
          YGRNG.C.Y.RVPPGTLVKEENEIV.DLSQP.DEY.AALGGAGGKGN.....N.N.AP.T.TPGQ.GQER
Retrocopy YGRNGDCFYIRVPPGTLVKEENEIVTDLSQPDDEYIAALGGAGGKGNHXXXPNGNQAPITWTPGQWGQER

Parental  VLYLELKTMAHAGMVGFPNAGKSSLLRAISNAKPAV-AYPFTTLNPHVXXXHYEGYQQVAVADIPGIIRG
          VLY.ELKTMAHA.MVGFP.AGKS.LLR.ISNAKPAV.AYPFTTLN.HV...HYE.YQQVAVADI....R.
Retrocopy VLYFELKTMAHAEMVGFPSAGKSALLRVISNAKPAVTAYPFTTLNSHVGIVHYEVYQQVAVADILVYKRS

Parental  AHQNRGLGF-AFLRHIERCRFLLFVVDLSIAEPWTQLEDLKYELEKYEEGLSERPHAVIGNKIDLPQSKV
          ....R.L.F.AFLRHIE.CRFLLFV.DLSIAEPWTQLEDLKYELEKYEEGL.ERPHAVIGNKIDLPQSKV
Retrocopy SSKQR-LRF>AFLRHIE*CRFLLFVMDLSIAEPWTQLEDLKYELEKYEEGL*ERPHAVIGNKIDLPQSKV

Parental  NFPQLQARLEQKVIPLSALTGENLEELLLHLKELYDDYVETECKQGREPLNW
          NFPQLQARLEQK.IPLSALTGENLEELLLHLKELYDDYVETECK.G.EPLNW
Retrocopy NFPQLQARLEQKIIPLSALTGENLEELLLHLKELYDDYVETECKEGQEPLNW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_138 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_138 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002751	1 retrocopy	retro_meug_138 ,
Ictidomys tridecemlineatus	ENSSTOG00000024521	1 retrocopy	retro_itri_517,