RetrogeneDB ID: retro_meug_121

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_3242:47247..47670(+)
• Located in intron of: ENSMEUG00000000750

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YPEL3
• Ensembl ID: ENSMEUG00000013777
• Aliases: None
• Description: yippee-like 3 (Drosophila) [Source:HGNC Symbol;Acc:18327]

Sequence

>retro_meug_121
GCTCTGGGCTCCCTTTGCTCACCATGGTCCCCTCCCCAGGTGGGGCTGCTGTCCCCAACCCCCACCATGGTTTGGATCTC
CAAGCCCAAAACCTTCCAAGCCTATATGGATGACTGTCACCGAAGATATAGCTGTGCCCACTGTCAGGCACACCTGGGCA
ACCACGATGACCTCATCTGCAAGTCCTTCCAGGGAAGCCTGGGCCATGCCTACCTCTTTAACTCTGTGGTGAACGTGGGT
TGTGGACCAGCTGAAGAGCATGTGCTACTACCTGGACTCCATGTGGTGGCTGATATCCGCTGTGAGAGCTGCAGGACCAC
CCTGGGCTGGAAATGTGAACAGGCCTTTGAGAGTAGTCAGAAATACAAGGAGGGGAAGTACGTCATTGAGCTCAACCACA
CGATCAAGGACAATGGCTGAGAC

Alignment

ORF - retro_meug_121 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.11 %
• Parental protein coverage: 71.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALGSLCSPWSPPRVGPLPPAPAMVRISKPKTFQAYLDDCHRRYSCAHCRAHLANHDDLISKSFQGSQGRA
          ALGSLCSPWSPP.VG.L.P.P.MV.ISKPKTFQAY.DDCHRRYSCAHC.AHL.NHDDLI.KSFQGS.G.A
Retrocopy ALGSLCSPWSPPQVGLLSPTPTMVWISKPKTFQAYMDDCHRRYSCAHCQAHLGNHDDLICKSFQGSLGHA

Parental  YLFNSVVNVGCGPAEERVLLTGLHAVADIHCESCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDNGW
          YLFNSVVNVGCGPAEE.VLL.GLH.VADI.CESC.TTLGWK.EQAFESSQKYKEGKY.IELNH.IKDNG.
Retrocopy YLFNSVVNVGCGPAEEHVLLPGLHVVADIRCESCRTTLGWKCEQAFESSQKYKEGKYVIELNHTIKDNG*

Parental  D
          D
Retrocopy D

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_121 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_121 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013777	1 retrocopy	retro_meug_121 ,