RetrogeneDB ID: retro_meug_1195

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold32307:1380..1860(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CREB1
• Ensembl ID: ENSMEUG00000007374
• Aliases: None
• Description: cAMP responsive element binding protein 1 [Source:HGNC Symbol;Acc:2345]

Sequence

>retro_meug_1195
TCCATTGTCCCAAATGGAACATTACAACTAGCCAGTCCAGGCACAGATGTAGTACAGGGGTTGCAGGCATTAATAATGAC
AAATGCAGGCAACACTCAGCAAGGAACAACAATTCTTCAGTATGCACAGACGTCTGATGGACAGCAGATTCTTGTCCCTA
ACAACCAAGTGGTTGTACAGACTGCATCAGGAAATATGCAATCTTATCAGATTTGTGCCACACCAGCAAATACTAACCTT
TCACAGGCAGTAGTGATGACATCTCCAGTCACTATAACATCTCAGACAACCAAAACAGATGATCCACAATTGAAAAGAGA
AATAAGATTGATGAAAAATAGAGAAACTGCTGGAGAATGCCATAGAAAGATAAAAGAATATGTTAAGTGTCTGGAAAATC
GAGTTACAGTCTTGGAAAATCAAAATAAAACTTTAATAGAAGAACTAGAAACTTTGAAAGATCTCTACTCCCATAAAAAT

Alignment

ORF - retro_meug_1195 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.38 %
• Parental protein coverage: 51.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AITQGGAIQLANNGTDGVQGLQTLTMTNAAATQASTTILQYAQTTDGQQILVPSNQVVVQAASGDVQTYQ
          .I...G..QLA..GTD.VQGLQ.L.MTNA..TQ..TTILQYAQT.DGQQILVP.NQVVVQ.ASG..Q.YQ
Retrocopy SIVPNGTLQLASPGTDVVQGLQALIMTNAGNTQQGTTILQYAQTSDGQQILVPNNQVVVQTASGNMQSYQ

Parental  IRTAPTST-IAPGVVMASSPALPTQ--PAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLEN
          I...P..T.....VVM.S......Q.........KRE.RLMKNRE.A.EC.RK.KEYVKCLENRV.VLEN
Retrocopy ICATPANTNLSQAVVMTSPVTITSQTTKTDDPQLKREIRLMKNRETAGECHRKIKEYVKCLENRVTVLEN

Parental  QNKTLIEELKALKDLYCHKS
          QNKTLIEEL..LKDLY.HK.
Retrocopy QNKTLIEELETLKDLYSHKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1195 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1195 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007374	3 retrocopies	retro_meug_1195 , retro_meug_2029, retro_meug_596,
Rattus norvegicus	ENSRNOG00000013412	1 retrocopy	retro_rnor_1387,