RetrogeneDB ID: retro_meug_1192

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold322212:456..903(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MARCH5
• Ensembl ID: ENSMEUG00000011031
• Aliases: None
• Description: membrane-associated ring finger (C3HC4) 5 [Source:HGNC Symbol;Acc:26025]

Sequence

>retro_meug_1192
GGTTTGTGTATTATGGAAAGAGCTGATCCTTTATTCCTTTTAACTGAATGCCTCATTATTCCTGTTATGCTAATACAAAG
CAAGATAATTCACTGGGAAGACTACATTCTTATATTGTGGCACAAATACTCTAATGAACTAGAGATTTTGAACAGCAAAT
TATTTCCAGGGATTGGATGTCCTGTTCCTTGTATTCCAGCTAAGGCAAGTCCTTTAGCAGATCATGTCTCTGCTACTTGA
ATTTTGTATGGAGCTCTTGTCTTTTCCACTATTGCTGATAGTTGGAAAACATGTTCAGTTAGTGTTAATTCTAACCCACA
AAGTACAATCTTGGGTAGAATTGCCTTTGTTGCCATAAAAGGAGCATTTAAAGTTTACTTCAGACAGAAACAATATTTGC
ATCAAGCACACCACAAAATGTTTTATTATCCAGAGCAAGAAGAAGCG

Alignment

ORF - retro_meug_1192 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.33 %
• Parental protein coverage: 56.02 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILNS-IFPGIGCPVPRIPAEAN
          GL..MERADPLFLL.....IPVMLI..K.I.WEDY.L.LW.KYSN.L.ILNS..FPGIGCPVP.IPA.A.
Retrocopy GLCIMERADPLFLLTECLIIPVMLIQSKIIHWEDYILILWHKYSNELEILNSKLFPGIGCPVPCIPAKAS

Parental  PLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTILXXIAFVAIKGAFKVYFKQQQYLRQAHRK
          PLADHVSAT.IL.GALVF.TIA....K....SVNSN.Q.TIL..IAFVAIKGAFKVYF.Q.QYL.QAH.K
Retrocopy PLADHVSAT*ILYGALVFSTIADS-WKTCSVSVNSNPQSTILGRIAFVAIKGAFKVYFRQKQYLHQAHHK

Parental  ILNYPEQEEA
          ...YPEQEEA
Retrocopy MFYYPEQEEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1192 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1192 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020981	1 retrocopy	retro_btau_1749,
Macropus eugenii	ENSMEUG00000011031	1 retrocopy	retro_meug_1192 ,
Mus musculus	ENSMUSG00000023307	3 retrocopies	retro_mmus_1559, retro_mmus_3211, retro_mmus_3373,
Sarcophilus harrisii	ENSSHAG00000018432	1 retrocopy	retro_shar_459,
Xiphophorus maculatus	ENSXMAG00000007675	1 retrocopy	retro_xmac_25,