RetrogeneDB ID:

retro_meug_119

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_3197:92286..92672(-)
Located in intron of:ENSMEUG00000009593
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS8
Ensembl ID:ENSMEUG00000001388
Aliases:None
Description:ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]


Retrocopy-Parental alignment summary:






>retro_meug_119
ATTCACACTGTACAAATCTGGGGTGGCCACAAGAAGCACTAAGTACTGAGGCTGAATATGGACAACTTTTCTTGGGACTC
TGATATTGTTACTGTAAACCTGGATCATTGATGTGGTGTACAACACATCTAACAAGGAGCTGGCACAGACCCAGGTGCTG
GTGAAGCACTGCAGCCCACTTACCAATCATACCCCCATACTGATGGAGGTATGAGTTCCACTCTGGCCTGCTCCTTGGGC
AAAATATGGAGGCTAAAATTGACTTCCAAGGAAGAAATTTTAAACAAGAAGCAAAGAAGATTGAGAAGAAATATGAAGAC
CAGAAGAAGGATGCTGAGATCAGCTTGCATCTAGAACGGCAGTGTGAGCAAGGTAAACTGTGGGCA

ORF - retro_meug_119 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 50.74 %
Parental protein coverage: 76.61 %
Number of stop codons detected: 3
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalIHTVRVRGGNKKYRALRL-DVGNFSWGSECCTRK-TRIIDVVYNASNNELVRTKTLVKNCIVLIDST-PY
IHTV...GG.KK...LRL...G....G...C..K.T.IIDVVYN.SN.EL..T..LVK.C..L...T.PY
RetrocopyIHTVQIWGGHKKH*VLRL<EYGQLFLGL*YCYCK<TWIIDVVYNTSNKELAQTQVLVKHCSPLTNHT>PY
ParentalRQWYESHYALPLGRKKGA-KLTPEEEEILNKKRSKKIQK-KYEERKKNAKISSLLEEQFQQGKLLA
...YE.H..L.LG....A.KLT..E.EILNKK........KYE..KK.A.IS..LE.Q..QGKL.A
Retrocopy*WRYEFHSGLLLGQNMEA>KLTSKE-EILNKKQ-RRLRR<KYEDQKKDAEISLHLERQCEQGKLWA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.