RetrogeneDB ID: retro_meug_1173

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold314029:1817..2219(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRSF5
• Ensembl ID: ENSMEUG00000001521
• Aliases: None
• Description: serine/arginine-rich splicing factor 5 [Source:HGNC Symbol;Acc:10787]

Sequence

>retro_meug_1173
GATCTCAAAGATTTCATGAGGCAAGCTGGGGAGGTATCCTTTGCAGATGCTCATAGACCTAAACTAGATAAAGGGGTGTT
TGAGTTTGCCTCTTACAGTGATTTGAAAAATGCTATCAAAAATCTTTCTGGAAAAGAAATAAATGGAAGCAAAATTAAAC
TGATTGAAGGCAGCAAAGGGCACAGCTGGTGGAGAAGTCGGTCATGTTCCCACACTAGGAGCTCTTCCAGATCTCGGAGC
TGATCTCATTCTTGTAGTTGCAAATCTTAAAACAGATCCAGAAGCTGAAGCAATAGCAAATCTTGATCTGTTAGTAGGTC
TCCTATGCCTGAGAAGAGTCAGAAACAGGACTCTTCAAGTAGATCTAAATCTCCACCATCTATGGATCTCCAGAGATCTA
GA

Alignment

ORF - retro_meug_1173 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.85 %
• Parental protein coverage: 50.19 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS
          DLKDFMRQAGEV.FADAHRPKL..GV.EFASYSDLKNAI..LSGKEING.KIKLIEGSK.HS..RSRS.S
Retrocopy DLKDFMRQAGEVSFADAHRPKLDKGVFEFASYSDLKNAIKNLSGKEINGSKIKLIEGSKGHSWWRSRSCS

Parental  RTRSSSRSRSRSRSRS-RSYSRSRSRSHSKSRSVSRSPMPEKSQKRGSSSRSKSPASVDRQRSR
          .TRSSSRSRS.S.S.S..S..RSRS.S.SKS.SVSRSPMPEKSQK..SSSRSKSP.S.D.QRSR
Retrocopy HTRSSSRSRS*SHSCSCKS*NRSRS*SNSKS*SVSRSPMPEKSQKQDSSSRSKSPPSMDLQRSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1173 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1173 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001521	2 retrocopies	retro_meug_1173 , retro_meug_2182,
Macropus eugenii	ENSMEUG00000016459	1 retrocopy	retro_meug_1048,
Monodelphis domestica	ENSMODG00000011362	1 retrocopy	retro_mdom_934,
Mus musculus	ENSMUSG00000021134	1 retrocopy	retro_mmus_2396,
Rattus norvegicus	ENSRNOG00000005513	1 retrocopy	retro_rnor_2900,
Tupaia belangeri	ENSTBEG00000001972	1 retrocopy	retro_tbel_2707,