RetrogeneDB ID: retro_meug_1161

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold31117:21769..22006(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: URM1
• Ensembl ID: ENSMEUG00000014147
• Aliases: None
• Description: ubiquitin related modifier 1 [Source:HGNC Symbol;Acc:28378]

Sequence

>retro_meug_1161
GAGAAGCACCAGGTCACCTTACCCAGCCAAGAAGAGCCATGGGATATCTGAAAACTTCTCATCTGGATGAGGAAGAACCT
ACTGAAGGAGCAGTCAGAATTATTCATCTAGGGAGATAGCAGGAGGTCAAGGATTTTGGTACTAATCAATAATGCTGACT
GGGAGCTGTAGGGTGAATTGGACTACCAATTACAGGACCAGGACAGCATCTTCTTCATCTCCACACTACATAGTGGT

Alignment

ORF - retro_meug_1161 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.01 %
• Parental protein coverage: 78.22 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKHQVTLPSQEEPWDIRNLLIWIRKNLLKERPELFIQGDSVRPGILVLINDADWELQGELDYQLQDQDNI
          .KHQVTLPSQEEPWDI..LLIW.RKNLLKE..ELFI.GDS.R..ILVLIN.ADWEL.GELDYQLQDQD.I
Retrocopy EKHQVTLPSQEEPWDI*KLLIWMRKNLLKEQSELFI*GDSRRSRILVLINNADWEL*GELDYQLQDQDSI

Parental  LFISTLHGG
          .FISTLH.G
Retrocopy FFISTLHSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1161 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1161 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000025612	2 retrocopies	retro_btau_1694, retro_btau_570,
Erinaceus europaeus	ENSEEUG00000012945	1 retrocopy	retro_eeur_458,
Loxodonta africana	ENSLAFG00000002178	1 retrocopy	retro_lafr_542,
Macropus eugenii	ENSMEUG00000014147	1 retrocopy	retro_meug_1161 ,