RetrogeneDB ID: retro_meug_1084

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold282519:2335..2719(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KDELR1
• Ensembl ID: ENSMEUG00000009868
• Aliases: None
• Description: KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 [Source:HGNC Symbol;Acc:6304]

Sequence

>retro_meug_1084
ATTTCGGGCAAGAGTCAGGTCCTGTTTGTCATGGTCTTCACTGTCCGCTACCTTGACCTGACCACCAACTACATCTCCCT
CTACAAGTCCATGAAGGTGGTCTACATTGCCTGCTCCTTCACCACCATCTGGAGGATCTACAGCAAGTTTAAGGCCCACT
CTGATGGTAACCACGACACCTTCCAAGTGGAGTTCCTCGTGGTTCCCACTGCCATTTTGGGCTTACTAATCAACCATGAC
TTCACACCAGTGGAGATCCGGACCTTCTTCATTTACCTGGAGTCCGTGGCCATCCTGCCACAGCTGTTCATGGTGAGCAA
GACGGAAGAAGAGGAGACCATTATCAGCCACTACCTGTTTGCCCTGGGCGTCTACAGGACACTA

Alignment

ORF - retro_meug_1084 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.84 %
• Parental protein coverage: 68.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ISGKSQ-LFPEVFITHYLDLLTNSISLDTSVKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPT
          ISGKSQ.LF..VF...YLDL.TN.ISL..S.KVVYIACSFTT.W.IYSKFKA..DGNHDTF.VEFLVVPT
Retrocopy ISGKSQVLFVMVFTVRYLDLTTNYISLYKSMKVVYIACSFTTIWRIYSKFKAHSDGNHDTFQVEFLVVPT

Parental  AILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTL
          AIL..L.NHDFTP.EI..TF.IYLESVAILPQLFMVSKT.E.ETI.SHYLFALGVYRTL
Retrocopy AILGLLINHDFTPVEIR-TFFIYLESVAILPQLFMVSKTEEEETIISHYLFALGVYRTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1084 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1084 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009868	1 retrocopy	retro_meug_1084 ,
Rattus norvegicus	ENSRNOG00000021082	1 retrocopy	retro_rnor_1060,