RetrogeneDB ID: retro_meug_1005

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold256524:1209..1481(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000005462
• Aliases: None
• Description: None

Sequence

>retro_meug_1005
GCCCAGGGATCTGAATTATCATCGGAAACATGAAGAGAATTGGGTTTCTCCAGCAATTTGCGCTGTAGCCCTTGCGATCT
TGGACAGTTTAGCTTAACTCACTTGGATCCTAATTGCAGAAAATGTTGCCTGGAAGAACCAGTTTGATACCTGGAATAAC
AACATCTATATGCAGGTGTTATTTCTGAAGTGTGTGGATGAAACTGGGGCGATCCCCCCAAGTACCGGCTTTTCTCAAGA
GTGAGAAACCTAAACTATTCAGGGAACTAAAA

Alignment

ORF - retro_meug_1005 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.52 %
• Parental protein coverage: 67.16 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AQGSELSSEACRDLGFSSNLLCSSCDLLGQFSLTPLDPDCRGCCQEEA--QFETRKLYAGAILEVCG-UK
          AQGSELSSE..R.LGFSSNL.CS.CD.LGQFSLT.LDP.CR.CC.EE.....E...LYAG.I.EVCG..K
Retrocopy AQGSELSSET*RELGFSSNLRCSPCD-LGQFSLTHLDPNCRKCCLEEPV*YLE*QHLYAGVISEVCG<MK

Parental  LGXXXXXXXFVKSDKPKLFRGLQ
          LG.......F.KS.KPKLFR.L.
Retrocopy LGRSPQVPAFLKSEKPKLFRELK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1005 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1005 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000004701	1 retrocopy	retro_dnov_2296,
Macropus eugenii	ENSMEUG00000005462	4 retrocopies	retro_meug_1005 , retro_meug_2191, retro_meug_769, retro_meug_817,
Monodelphis domestica	ENSMODG00000008134	2 retrocopies	retro_mdom_1289, retro_mdom_1504,
Ochotona princeps	ENSOPRG00000003411	2 retrocopies	retro_opri_157, retro_opri_897,
Vicugna pacos	ENSVPAG00000011775	1 retrocopy	retro_vpac_621,