RetrogeneDB ID: retro_meug_1003

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2558:54703..54961(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PDE6G
• Ensembl ID: ENSMEUG00000014404
• Aliases: None
• Description: phosphodiesterase 6G, cGMP-specific, rod, gamma [Source:HGNC Symbol;Acc:8789]

Sequence

>retro_meug_1003
AGCCCCACTATGAACTTAGAGCTTCCACCCGAAGCCAAGATCAGATCAGTCATCAGAGTGGTGGGGGGACCAGTTACCCC
AGGAAAAGGACCATCAGAATTCAAGCAGTCACAAACCTGACAGTTCAAAAGCAAGTCCTCCAAGCAAGATGAACAAGGTT
TCAGTGATGATACTTCTAGAATAGAGAGCTTGGATATCACTGTCATCTGTCCCTGGGAAGCCTTCAGCCACTTGGAGTTG
TGTGAGTTGACCCAGTAT

Alignment

ORF - retro_meug_1003 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.05 %
• Parental protein coverage: 96.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NPIMNLE-PPKPEIRSATRVVGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITV
          .P.MNLE.PP...IRS..RVVGGPVTP.KGP..FKQ.QT.QFKSK..K...QGF.DD....E.L..DITV
Retrocopy SPTMNLELPPEAKIRSVIRVVGGPVTPGKGPSEFKQSQT*QFKSKSSKQDEQGFSDDTSRIESL--DITV

Parental  ICPWEAFNHLELHELAQY
          ICPWEAF.HLEL.EL.QY
Retrocopy ICPWEAFSHLELCELTQY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1003 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1003 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014404	1 retrocopy	retro_meug_1003 ,
Sarcophilus harrisii	ENSSHAG00000013112	1 retrocopy	retro_shar_384,