RetrogeneDB ID: retro_meug_10

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold444789:7..703(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000012962
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000002017
• Aliases: None
• Description: None

Sequence

>retro_meug_10
ATGGGCAACGCGGCCACCGCCAAGAAGGGCAGCGAGCTGGAGAGCGTGAAAGAATTCCTGGCCAAGGCCAAGGAGGAATT
TCTCAAGAAATGGGAAGCCCCGGCGCAGAACACGGCCCAGCTGGAGCACTTTGACCGCATCAAGACCCTGGGCACGGGCT
CGTTCGGCCGCGTGATGCTGGTGAAGCACAAGGAGACGGGCAACCACTTTGCCATGAAGATCCTGGACAAGCAGAAGGTG
GTGAAGCTGAAGCAGATCGAGCACACCCTGAACGAGAAGCGCATCCTGCAGGCTGTCAACTTCCCCTTCCTCGTCCGGCT
CGAATATTCCTTCAAGGACAACACCAACCTGTACATGGTGATGGAGTACGTGCTGGGCGGGGAGATGTTCTCCCACCTGC
GGCGCATCGGCCGGTTCAGCGAGCCCCACGCACGCTTCTATGCGGCCCAGATCGTCCTGACCTTCGAGTATCTGCACTCG
CTGGACCTGATCTACCGGGACCTGAAGCCCGAGAACCTTCTCATCGACCAGCACGGCTACATCCAGGTGACAGACTTTGG
TTTTGCCAAGCGCGTCAAAGGCCGGACCTGGACCCTGTGCGGGACACCCGAGTACCTGGCTCCCGAGATCATCCTCAGCA
AGGGCTACAACAAGGCCGTGGACTGGTGGGCCCTGGGAGTCCTGATCTACGAGATG

Alignment

ORF - retro_meug_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.52 %
• Parental protein coverage: 73.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KEFLAKAKEEFLKKWESPPQSTVQLDQFDRIKTLGTGSFGRVILVKHRETGNYFAMKVLDKQKVVKLKQI
          KEFLAKAKEEFLKKWE.P.Q.T.QL..FDRIKTLGTGSFGRV.LVKH.ETGN.FAMK.LDKQKVVKLKQI
Retrocopy KEFLAKAKEEFLKKWEAPAQNTAQLEHFDRIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQI

Parental  EHTMNEKRILQAINFPFLVRLEYSFKDNTNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFE
          EHT.NEKRILQA.NFPFLVRLEYSFKDNTNLYMVMEYV.GGEMFSHLRRIGRFSEPHARFYAAQIVLTFE
Retrocopy EHTLNEKRILQAVNFPFLVRLEYSFKDNTNLYMVMEYVLGGEMFSHLRRIGRFSEPHARFYAAQIVLTFE

Parental  YLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALG
          YLHSLDLIYRDLKPENLLIDQ.GYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALG
Retrocopy YLHSLDLIYRDLKPENLLIDQHGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALG

Parental  VLIYEM
          VLIYEM
Retrocopy VLIYEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_10 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_10 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000072062	1 retrocopy	retro_hsap_46,
Gorilla gorilla	ENSGGOG00000013294	1 retrocopy	retro_ggor_2856,
Macropus eugenii	ENSMEUG00000002017	2 retrocopies	retro_meug_10 , retro_meug_1166,
Monodelphis domestica	ENSMODG00000012087	1 retrocopy	retro_mdom_1978,
Pan troglodytes	ENSPTRG00000010585	1 retrocopy	retro_ptro_80,
Sarcophilus harrisii	ENSSHAG00000009246	2 retrocopies	retro_shar_13, retro_shar_49,