RetrogeneDB ID:

retro_lafr_99

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_3:53979076..53979487(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSLAFG00000002511
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:H3F3A
Ensembl ID:ENSLAFG00000008083
Aliases:None
Description:Histone H3 [Source:UniProtKB/TrEMBL;Acc:G3T157]


Retrocopy-Parental alignment summary:






>retro_lafr_99
ATGCCTCCTACAAGGCTGACTGCCTTTAAATCAACCGGTGGAAAAGCACTCAGGAAGCAACTGGCTACAAAAGCCACTCA
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAAGCCTGGTACTGTGGCACTCCCGGAAATCCGAC
GTTATCATAAGTCCACTGAACTTCTGATTCTCAAACTTCCCTCCCGACGCCTGGTCCAAGAAATTGCTCAGGACATCACA
ACAGATCTGCGTTTCCAGAGCGCAGCTATTGGTGCTTTGCAGAAGGCAAGTGAGACCTACCAGGTTGGCCTTTTTGAGGA
CAACAGTTTGTGTGCTCTCCACGCCAAACGTGTAACAATTATGCCAAAAGACATCCCTCTAGCACGCCACGTACGTGGAG
AACATGCTTAA

ORF - retro_lafr_99 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.15 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
M..T..TA.KSTGGKA.RKQLATKA..KSAPSTGGVKKPHRY.PGTVAL.EIRRY.KSTELLI.KLP..R
RetrocopyMPPTRLTAFKSTGGKALRKQLATKATHKSAPSTGGVKKPHRYKPGTVALPEIRRYHKSTELLILKLPSRR
ParentalLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
LV.EIAQD..TDLRFQSAAIGALQ.ASE.Y.VGLFED..LCA.HAKRVTIMPKDI.LAR..RGE.A
RetrocopyLVQEIAQDITTDLRFQSAAIGALQKASETYQVGLFEDNSLCALHAKRVTIMPKDIPLARHVRGEHA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Loxodonta africana was not studied using RNA-Seq expression data.