RetrogeneDB ID:

retro_lafr_932

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_5:2124116..2124509(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CHRAC1
Ensembl ID:ENSLAFG00000001188
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_932
ATGGCGGACGTGGTTGTCGGCAAAGAGAAGGGCGGGGAGCAGCGGCTGGTGTCGTTGCCTCTGTCCCGCATCCGGGTCAT
CATGAAGAGCTCCCCCGAGGTGTCCAGCATTAACCAGGAGGCGCTGGTGCTCACGGCCAAGGCCACGGAACTCTTTGTTC
AGTATCTAGCCACCTACTCCTACAAACATGGCAGTGGAAGAGACAAGAAAGCTCTGACGTACAGTGATCTGTCAAATACT
GCAGAGGAATCAGAAACTTTTCAGTTTCTTGCAGCTATATTACCAAAGAAGATTTTAGCTAGTAAATACCTGAAAATGCT
TTAACAGAGAAGAGGGGAGAAGATGAGGAAGAAAGAGAATGACAACAATGATGAATGTGACGATGAGGAAGCT

ORF - retro_lafr_932 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.31 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMADVVVGKEKGGEQRLVSLPLSRIRVIMKSSPEVSSINQEALVLKTLRSNELFVQYLATYSYKHGSGRDK
MADVVVGKEKGGEQRLVSLPLSRIRVIMKSSPEVSSINQEALVL.T....ELFVQYLATYSYKHGSGRDK
RetrocopyMADVVVGKEKGGEQRLVSLPLSRIRVIMKSSPEVSSINQEALVL-TAKATELFVQYLATYSYKHGSGRDK
ParentalKALTYSDLSNTAEESETFQFLADILPKKILASKYLKMLKE-EKREEDEEEND-NND-ECDDDEA
KALTYSDLSNTAEESETFQFLA.ILPKKILASKYLKML...EKR.EDEEE....N..ECDD.EA
RetrocopyKALTYSDLSNTAEESETFQFLAAILPKKILASKYLKML*Q<EKRGEDEEERE>DNNDECDDEEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Loxodonta africana was not studied using RNA-Seq expression data.