RetrogeneDB ID:

retro_lafr_758

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_36:11243835..11244210(+)
Located in intron of:ENSLAFG00000006754
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM96A
Ensembl ID:ENSLAFG00000011114
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_758
CGGCAGCTTTAGATCATGGAAAAGAAAGCACTAGTAGCTTACAAATTTATTCAAACTACCTGGGACGCAAAGAAGCCCAA
TACTTTAGGAGAACTGGAAGTGATAACACAAAGTTGAGTGGAGGTTCAGGACATAACTGCAGAAGACTATCTGGTTATTA
TCAGGTTCATGCCAACAGTATCTCATTGCTGTCTGGTGACTCTTACTGGGCTGTGCTTCAAAGTAAAATCTGGGTAAGAG
TTTACCTTTTAAACCTGCATTGAATATCTACATTTCTGAATAAACCCACTCAAAAGGACAAGACTTCAACAAGTAGATAA
ACCACAAGAGTGAGTGGCCTGGACTGGAATGGAGATGCCCAACATACTGGAAATC

ORF - retro_lafr_758 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.63 %
Parental protein coverage: 77.5 %
Number of stop codons detected: 5
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalRQSQIMEEKALEVYDLIRNIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIG
RQ..IME.KAL..Y..I....D..KPNTL.ELEV.T.S.VEVQ.I...DYLVIIRF.PTV.HC.L.TL.G
RetrocopyRQL*IMEKKALVAYKFIQTTWDAKKPNTLGELEVITQS*VEVQDITAEDYLVIIRFMPTVSHCCLVTLTG
ParentalLCLRVK-LQRCLPFKHKLEIYISEGTHSTEEDINKQINDK-ERVA-AAMENPNLREI
LC..VK.L...LPFK..L.IYISE.THS...D.NK.IN.K.E.VA...ME.PN..EI
RetrocopyLCFKVK>LGKSLPFKPALNIYISE*THSKGQDFNK*INHK<E*VAWTGMEMPNILEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Loxodonta africana was not studied using RNA-Seq expression data.