RetrogeneDB ID:

retro_lafr_649

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_28:12654133..12654518(-)
Located in intron of:ENSLAFG00000002338
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22
Ensembl ID:ENSLAFG00000006352
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_649
ATGACACCTGTGAAAAAGCTTGTGGCAAAAGGGGGCAAAAAAAAAGAAGGAGGTTTTGAAGTTCACCCTTGACTGCACCC
ACCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTTCTTCTAGAAAGAATCAAAGTTAATGGGAAAGTT
GGTAATCTTGGTGGAGGGGTTGTAACCATTGAATGAAGCAAGAGCAAGATTACTGTAACCTCCGAGGTGCCTTTTTCCAA
AAGATATTTGAAGTATCTCACAAAAAAATATTTGAAGAAGAGTAATCTATGTGATTGGTTGTGCGTGGTCGCTAACAGCA
AAGAAAGTTACGAATTACAATACTTCTAGATTAACCAGGATGAAGAAGAGGAAGAAGATGAGGAT

ORF - retro_lafr_649 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.47 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAPVKKLVAKGGKKK-KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSK
M.PVKKLVAKGGKKK.K.VLKFTLDCTHPVEDGIMDAANFEQFL.ERIKVNGK.GNLGGGVVTIE.SKSK
RetrocopyMTPVKKLVAKGGKKK>KEVLKFTLDCTHPVEDGIMDAANFEQFLLERIKVNGKVGNLGGGVVTIE*SKSK
ParentalITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED
ITVTSEVPFSKRYLKYLTKKYLKK.NL.DWL.VVANSKESYEL.YF.INQDEEEEEDED
RetrocopyITVTSEVPFSKRYLKYLTKKYLKKSNLCDWLCVVANSKESYELQYF*INQDEEEEEDED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Loxodonta africana was not studied using RNA-Seq expression data.