RetrogeneDB ID:

retro_itri_756

Retrocopy
location
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393318.1:8540652..8540840(-)
Located in intron of:ENSSTOG00000003121
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFA3
Ensembl ID:ENSSTOG00000025377
Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa [Source:HGNC Symbol;Acc:7686]


Retrocopy-Parental alignment summary:






>retro_itri_756
AAATTTGCTGCCTTTCTGAGGAAAGCCTGGGCCTAGGAGCTGGTGGTTGTGTCCTTCGCCATTGGAAGTCTCTCTGAATT
CTGCCCCCATTCAGCCCCTACACCAAGTATGCCATCATGATCAACAAGGCCATACCCTACAACTACCCAGTGTCCCTCCA
AGATGATGGGAACGTGCCTGATGTGCCT

ORF - retro_itri_756 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.85 %
Parental protein coverage: 77.11 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalELAAFLKNAWAKEPVLVVSFAIGSLAV-ILPPLSPYTKYAIMINKATPYNYPVPVRDDGNMPDVP
..AAFL..AWA.E...VVSFAIGSL...ILPP.SPYTKYAIMINKA.PYNYPV...DDGN.PDVP
RetrocopyKFAAFLRKAWA*E-LVVVSFAIGSLSE<ILPPFSPYTKYAIMINKAIPYNYPVSLQDDGNVPDVP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Ictidomys tridecemlineatus was not studied using ChIP-Seq data.