RetrogeneDB ID:

retro_itri_299

Retrocopy
location
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393283.1:7947862..7948378(+)
Located in intron of:ENSSTOG00000007895
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BNIP3
Ensembl ID:ENSSTOG00000012456
Aliases:None
Description:BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084]


Retrocopy-Parental alignment summary:






>retro_itri_299
GAGCTACACTTTAGCAATAATGGAAATGGGAGCAGTGCTTCAGTTTCAGTTTTTGTTTATAATGATGACATGGAAAAAAT
ACTGCCAGGTGCCCAGCATGAATCTGGGATGCAGTAGCTCCAAGAGTTCTCAATGAGAGACAGCCATCTCACTTATAGGC
ACCACTAGATACAAATAGAGCTTCTGAAACAGACACCCTTAGCATTAGAGAAAACAGCAGCTCTCAGTCCAAGAAAGATG
TTATTAAGGAAAGAAGCTGGAAGATCTTGAAGAAAAACTTAGATTGAATAAATGGCTGATCAAGTCATCTAAAAAAATAT
ATCTCCCCAAGGAGTTCCTCCTTAAATACCAGAAGTACACATCTACTCTCAGTATGAGAAACACCACACTAAAGAGAAAG
GAGCATCTTCTTGGTGAAATTTCTAAAGGTTTTTCATCTCTGCTGCTCTTTCCTCCACTGGCCATTGGCCCAGGAACTAT
GTTAGAAGGCATATAACAGCCTCCACCAGCACCTTT

ORF - retro_itri_299 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.78 %
Parental protein coverage: 90.16 %
Number of stop codons detected: 4
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalELHFSN-GNGSGVPASVSIYNGDMEKILLDAQHESGR-SSSKSSHCDS-PPRSQTPQENTRASETDAHSI
ELHFSN.GNGS....SV..YN.DMEKIL..AQHESG..SSSKSS.....P.....P....RASETD..SI
RetrocopyELHFSNNGNGSSASVSVFVYNDDMEKILPGAQHESGM>SSSKSSQ*ET>PSHL*APLDTNRASETDTLSI
ParentalGEKNSSQSEEDYLERRKEVESILKKNSDWIWDWSSRP-ENIPP-KEFLFRHPKRTATLSMRNTSVMKKGG
.E..SSQS..D....R.....ILKKN.D.I...SS....NI.P.KEFL....K.T.TLSMRNT....K..
RetrocopyRENSSSQSKKDVIKERS--WKILKKNLD*ING*SSHL>KNISP>KEFLLKYQKYTSTLSMRNTTLKRKEH
ParentalIFSAEFLKVFLPSLLLSHLLAIGLGI-YIGRRLTTSTSTF
....E..K.F..SLLL...LAIG.G..Y..R..T.STSTF
RetrocopyLL-GEISKGF-SSLLLFPPLAIGPGT<YVRRHITASTSTF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide