RetrogeneDB ID:

retro_hvul_40

Retrocopy
location
Organism:Barley (Hordeum vulgare)
Coordinates:1:270045143..270046625(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MLOC_74069
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_hvul_40
GACGACACCGTCCAAGGGATGACCGGAAACCTGTTCGACGCCTTCCTGAGACCCTACTTCCTTGAGGCCTACCGTCCGCT
CAGAAAGGGAGACCTGTTCCTGGTGAGAGGCGGCATGACGAGCGTGGAGTTCAAGGTCGTGGAGACCGACCCCGCGGAGT
ACTGCATCGTCGCTCCTGACACGGAGGTTTTCTGCGACGGCGAGCCTGTCAAGAGGGAGGACGAGGAGAGGCTCGACGAC
GTCGGCTACGACGATGTCGGCGGAGTCAGGAAGCAGATGGCCCAGATCAGAGAGCTGGTTGAGCTCCCGCTGCGCCACCC
CCAGCTGTTCAAGTCCATTGGTGTCAAGCCTCCGAAGGGCATCTTGCTGTATGGGCCACCTGGGACCGGCAAAACCCTCA
TTGCCAGAGCTGTGGCCAACGAGACAGGCGCCTTCTTCTTCCTGATCAATGGCCCGGAGATTATGTCGAAGCTCGCCGGA
GAAAGCGAGAGCAACCTCAGGAAGGCGTTTGAAGAGGCCGAGAAGAACGCGCCGGCCATCATCTTCATCGACGAGATTGA
CTCCATAGCCCCAAAGAGAGAAAAGACCAACGGAGAGGTGGAAAGGCGTATCGTTTCGCAGCTGCTCACTCTCATGGATG
GGCTTAAGTCCCGTGCACACGTTATTGTCATGGGTGCTACCAACCGCCCGAACAGCATCGACCCTGCTCTCAGAAGGTTT
GGAAGGTTTGATAGAGAGATCGACATTGGAGTCCCCGATGAGGTCGGGCGGCTCGAGGTTCTCCGGATTCACACTAAGAA
CATGAAGCTGGCTGAAGATGTTGAGCTGGAGCATGTTTCAAGAGACACCCATGGGTACGTCGGCGCCGATCTCGCTGCCC
TTTGTACCGAGGCTGCTCTCCAGTGCATTCGCGAGAAGATGGATATCATAGACCTCGAGGATGACACCATTGATGCGGAG
ATACTGAATTCCATGGCCGTCACAAATGACCATTTCAAGATTGCACTGGGGACAAGCAACCCATCTGCTCTTCGTGAAAC
TATGGTCGAAGTTCCGAATGTCTCTTGGGAAGATATTGGTGGCCTGGAGAGTGTAAAAAGGGAGCTGCAGGAGACCGTCC
AGTATCCAGTGGAGCATCCAGAGAAATTCGAGAAGTTTGGCATGGCTCCCTCCAAAGGTGTTCTGTTCTACGGCCCTCCG
GGCTGCGGCAAGACCTTGTTGGCCAAGGCGATTGCCAATGAGTGCCAGGCAAACTTCATCAGCATCAAAGGACCGGAGCT
GCTTACCATGTGGTTTGGCGAGAGCGAGGCCAATGTGCGTGAGATCTTCGACAAGGCTAGGGGGTCGGCACCATGCGTCC
TCTTCTTTGACGAGCTCGACTCGATTGCCACCAAGCGAGGAAGCAGTGTTGGCGATGCCGGAGGTGCCGCCGATAGGGTG
CTGAATCAGCTTCTTACCGAGATGGACGGCATGAATGCCAAG

ORF - retro_hvul_40 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.56 %
Parental protein coverage: 78.91 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPV
DDTV.G.TGNLFDAFL.PYFLEAYRPLRKGDLFLVRGGM.SVEFKV.ETDPAEYCIVAPDTE.FCDGEPV
RetrocopyDDTVQGMTGNLFDAFLRPYFLEAYRPLRKGDLFLVRGGMTSVEFKVVETDPAEYCIVAPDTEVFCDGEPV
ParentalKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLFGPPGSGKTLIARAVAN
KREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL.GPPG.GKTLIARAVAN
RetrocopyKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGTGKTLIARAVAN