RetrogeneDB ID: retro_hsap_2339

Retrocopy location

• Organism: Human (Homo sapiens)
• Coordinates: 2:162357607..162364216(-)
• Located in intron of: ENSG00000272401

Retrocopy information

• Ensembl ID: ENSG00000226121
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AHCTF1
• Ensembl ID: ENSG00000153207
• Aliases: AHCTF1, ELYS, MST108, TMBS62
• Description: AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:24618]

Sequence

>retro_hsap_2339
ATGGCGGCGGAACGGCGCTGTGGAAGTATGCGAGACTTAAGAGCTCAAGTGACTAGTGGTCTCCTGCCATTTCCAGAAGT
GACTCTTCAAGCCCTTGGAGAAGACGAAATAACATTAGAATCTGTGCTTCGTGGAAAGTTTGCTGCGGGGAAAAATGGAC
TTGCTTGCTTGGCTTGTGGTCCACAACTTGAGGTAGTAAACTCTATAACAGGAGAGCGATTGTCTGCTTACAGATTCAGT
GGAGTCAATGAACAGCCTCCTGTAGTTTTAGCTGTGAAAGAATTCTCTTGGCAGAAGAGAACTGGATTATTAATAGGATT
GGAAGAAACAGAAGGGAGTGTTCTCTGTCTTTATGACCTTGGAATATCAAAAGTAGTTAAAGCAGTTGTTCTTCCTGGAA
GGGTAACAGCTATTGAACCTATAATTAATCATGGAGGAGCCAGTGCAAGCACTCAGCATTTACATCCAAGTCTGCGATGG
CTTTTTGGAGTGGCAGCTGTGGTCACTGATGTTGGACAGATCCTTCTTATTGACCTATGTTTGGATGACTTGTCATGCAA
TCAAAATGAAGTTGAAGCATCAGATCTTGAAGTTCTAACTGGTATCCCAGCTGAAGTACCACACATTAGAGAAAGTGTGA
TGAGAGAAGGGCGCCATCTGTGTTTCCAGTTAGTAAGTCCAACAGGAACAGCCGTTTCAACTCTTAGTTACATAAGCAGG
ACAAATCAGCTTGCTGCAGGTTTTTCTGATGGCTATCTAGCACTTTGGAACATGAAAAGCATGAAAAGAGAATATTACAT
ACAATTGGAAAGTGGACAAGTTCCTGTATATGCTGTCACTTTTCAAGAACCTGAGAATGATCGTCGGAATTGCTGCTACT
TGTGGGCTGTTCAGTCTACACAAGATAGTGAAGGGGATGTTTTGAGTTTGCATCTACTGCAGCTGGCCTTTGGTAATAGA
AAGTGTTTGGCATCAGGACAAATCTTATATGAGTGGTTAGAATACTGTGAAGAAAGATACACTCTGGACCTGACAGGTGG
CATGTTCCCTTTGAGGGGACAGACGAGTAATACCAAATTGTTGGGATGCCAGAGTATAGAGAAATTTCGATCTCATGGTG
ACAGGGAGGAAGGCGTGAATGAAGCTCTATCGCCTGACACTAGTGTTTCAGTCTTTACCTGGCAGGTGAATATATATGGA
CAGGGAAAGCCTTCTGTATATTTGGGGCTTTTTGATATAAATCGTTGGTATCATGCACAAATGCCAGATTCGTTAAGGTC
AGGAGAATATCTACATAATTGCTCTTATTTTGCACTGTGGTCATTGGAGTCTGTTGTAAGTAGGACTTCTCCACATGGCA
TCTTGGATATATTAGTACATGAGAGAAGTTTAAATAGAGGAGTCCCTCCTTCATATCCACCTCCCGAGCAGTTTTTTAAC
CCAAGCACTTATAATTTTGATGCCACTTGTTTGTTAAACTCGGGAGTTGTTCATTTAACTTGTACTGGCTTTCAGAAGGA
GACTTTGACTTTTTTAAAGAAATCAGGTCCATCACTCAATGAACTCATTCCTGGTGGTTATAATCGACGTCTTGTAGCTG
GCCTTCTTTCCCCAAGTTTTGTTGATGTTCAGCCTTCCAGTTTAAGCCAAGAAGAACAGTTAGAAGCTATATTGTCAACA
GCAATTCAGACTAGTTCCCTGGGACTTTTGACTGGTTATATCCGAAGATGGATAACAGAAGAACAACCAAATTCTGCCAC
TAATTTGCGCTTTGTTCTTGAATGGACGTGGAATAAAGTGGTTCTCACAAAAGAGGAATTTGACAGACTATGTGTGCCAT
TATTTGATGGTTCGTGTCATTTCATGGATCCACAAACTATACAGTCTATCCAGCAATGCTATTTGCTTCTTAGCAATCTT
AATATAGTCTTGAGCTGTTTTGCATCAGAAGCCCGAGAGATCACTGAGAGAGGACTGATAGACTTAAGCAATAAGTTTGT
GGTTTCCCACCTCATCTGTCAGTATGCACAAGTGGTTCTTTGGTTCTCTCATTCTGGGCTTTTACCAGAAGGCATAGATG
ATTCTGTGCAGTTGTCAAGGTTATGCTACAACTACCCTGTAATTCAGAACTACTACACCAGTCGTCGACAGAAGTTTGAG
CGTTTATCAAGAGGGAAGTGGAATCCCGATTGCTTGATGATTGATGGACTGGTTTCTCAGTTAGGAGAGCGAATTGAGAA
GTTGTGGAAACGAGATGAAGGAGGCACAGGAAAATATCCTCCTGCTAGTCTGCATGCAGTACTTGATATGTACCTATTAG
ATGGCGTTACTGAAGCAGCCAAACACTCTATTACCATTTATTTGCTACTTGATATTATGTATTCCTTTCCCAACAAAACA
GACACTCCCATTGAATCTTTCCCAACTGTATTTGCCATTTCTTGGGGCCAAGTTAAACTTATTCAGGGTTTTGGTTGATA
GATCATAATGACTATGAGAGTGGTTTGGATCTTTTGTTTCATCCAGCTACTGCAAAACCTTTGTCATGGCAACATTCAAA
GATTATTCAGGCATTCATGAGTCAGGGCGAGCACAGACAAGCCCTCAGATATATTCAGACAATGAAGCCAACAGTGTCCA
GTGGTAGCGATGTTATCCTTCACCTCACTGTTTTGCTTTTTAGTAGGTGCATGGTTGAAGCCTGGAATTTTTTGCGGCAA
CATTGCAATAGGTTGAATATAGAGGAGTTACTGAAGCACATGTATGAAGTCTGTCAGGAAATGGGCTTGATGGAAGATTT
ACTGAAGTTACCATTTACAGACACTGAGCAGGAATGTTTAGTGAAATTTTTGCAGTCCAGTGCCAGCATTCAGAGTCATG
AATTCCTTTTAGTGCACCATTTGCAGCATGCCAATTATGTGCCTCCCTTGAAGCTGAACCAAACTCTGAAGATTAATGTT
ATGAATGATCGTGATCCTCGTTTGCGGGAGAGATCACTGGCTCGAAATTCTATATTAGACCAGTATGGAAAAATCCTTCC
TAGAGTCCATCGAAAATTAGCCATTGAACGAGCTAAGCCTTATCATCTGTCAACATCATCAGTTTTTCGATTAGTTTCTA
GACCCAAACCATTATCAGCAGTTCCAAAGCAAGTTGTAACAGGAACTGTGTTGACAAGATCTGTTTTCATCAACAATGTG
TTATCTAAAATTGGAGAAGTTTGGGCAAGCAAAGAACCTATAAATAGCACCACACCTTTCAATAGTTCTAAAATAGAAGA
ACCATCTCCTATAGTGTATTCGCTCCCAGCTCCAGAGCTGCCTGAGGCATTTTTTGGAACACCAATTTCAAAAGCATCAC
AAAAAATTTCTAGACTGCTAGATTTGGTTGTTCAGCCTGTCCCCCGGCCTTCTCAGTGTTCGGAGTTTATTCAGCAAAGC
TCCATGAAATCTCCTTTGTACCTAGTATCCCGTTCACTGCCCTCAAGTTCACAATTAAAAGGATCGCCTCAGGCCATCTC
CAGGGCTTCAGAATTACATTTGCTTGAAACTCCTCTTGTAGTTAACAAAGCTAAAAGTTTGGCCATGTCAGTTACTACTT
CTGGATTTTCTGAGTTCACTCCTCAGTCCATCCTGAGGTCTACTCTTCGATCAACACCTTTAGCATCTCCCTCTCCATCA
CCTGGAAGGTCTCCTCAACGACTTAAAGAAACTAGAATTTCATTTGTGGAAGAAGATGTCCACCCAAAGTGGATTCCTGG
GGCTGCAGATGATAGCAAATTAGAAGTATTTACTACACCTAAAAAATGTGCAGTTCCAGTGGAAACTGAATGGCTGAAGA
GCAAAGATAGGACCACATCTTTTTTCCTGAACAGCCCTGAAAAGGAGCATCAAGAAATGGATGTGGGGTCACAAAGTTTA
GAGAAACTGGATGTGAGCAAAGGAAACAGCAGTGTTTCAATCACATCCGATGAGACTACCTTAGAGTATCAGGATGCACT
GTCACCGGAAGACCTTGAAGAGACTGTTTTCACGGCCTCTAAGCCCAAAAGCTCTTCCACTGCACTAACTACTAATGTAA
CTGAACAAACTGAAAAGGATGGAGATAAAGATGTATTTGCATCAGAAGTAACTCCTTCAGACCTACAGAAACAAATGGGC
AATTTAGAAGATGCAGAAACAAGGATCTCTTAGTTGCAGCAGAGGCATTTTCAGAATTGAATCACTTAAGCCCAGTTCAA
GGAACTGAAGCTTCTCTTTGTGCACCATCAGTCTATGAAGGGAAAATCTTCACCCAGAAGTCCAAGGTACCAGTGTTGGA
TGAAGGATTAACATCTGTTGAAACCTACACCTCTGCAATTAGAGCAAATGACAATAAATCTATGGCTGATGTCCTTGGTG
ATGGTGGAAACTCCTCACTCACTATCTCTGAAGGTCCTATTGTCTCTGAGCGCAGGCTTAACCAGGAAGTAGCGCTGAAC
TTAAAAGAAGATCATGAAGTAGAAGTTGGTGTACTAAAAGAAAGTGTTGACTTACCAGAAGAAAAGCTTCCAATTTCTGA
CAGCCCTCCTGATACTCAAGAAATTCATGTGATTGAACAGGAAAAGCTTGAAGCTCAAGATTCAGGAGAAGAGGCTAGGA
ATCTTTCATTTAATGAGTTATATCCCTCTGGAACACTTAAGCTTCAGTACAATTTTGATACTATTGACCAACAGTTTTGT
GACTTAGCTGATAATAAAGACACTGCTGAATGTGACATTGCTGAAGTAGATGGGGAACTTTTTGTGGCTCCAAGCAACTT
TACCTTGATATTGGAAGGTGAAGAAGGAGAAGTTGAGCCAGGTGATTTTGCATCATCTGATGTGTTACCTAAAGCAGCTA
ACACAGCAACTGAAGAAAAACTTGTATGCAGTGGGAAAAATGATAATCATGGACAAGTTGCAAATTTGCCATCTGCTGTA
ACTAGTGACCAAAAGTCCCAAAAAGTAGAGACTTTACCATATGTGCCTGAACCTATTAAAGTAGCAATTGCAGAAAATTT
GCTAGACGTAATTAAAGACACAAGAAGTAAAGAAATTACTTCAGATACAATGGAACAGTCCATTCATGAAACAATACCTT
TAGTGAGCCAAAACATAATGTGTCCCACTAAATTAGTCAAATCTGCATTTAAGACTGCTCAGGAAACAAGCACAATGACT
ATGAATGTCAGCCAGGTTGATGACGTGGTTTCCTCCAAAACTCGTACGAGAGGTCAACGTATCCAAAACGTGAATGTCAA
ATCAGCACAACAGGAAGCATCAGCAGATGTTGCTACTCCTAAGATGCCAGGGCAGTCAGTCAAGAAGAAAACTAGGAAGG
CAAAAGAAATTTCTGAAGCTTCTGAAAACATCTATTCTGATGTCAGAGGACTATCTCAGAACCAGCAAATACCTCAAAAT
TCTGTTACGCCTAGGAGAGGAAGGAGAAAGAAAGAAGTTAATCAGGACATACTAGAAAACACCAGTTCTGTGGAACAAGA
ATTACAGATCACTACAGGTAGGGAATCAAAAAGATTAAAATCATCTCAGCTGTTGGAACCAGCAGTTGAAGAAACTACTA
AAAAAGAAGTTAAGGTTTCATCTGTTACAAAAAGGACTCCTAGAACAATTAAAAGATCTGTAGAAAATCAGGAAAGTGTT
GAAATTATAAATGATCTAAAAGTTAGTACGGTAACAAGTCCTAGCAGAATGATCAGAAAATTGAGAAGTGCTCATTTAGA
TGCTTCTGAAAATACAGGAAATAAGCAAGAAGATAAATCCAGTGACAAGCAGCTGCCTATTAAACATATTAGAAGGGTCA
GAGGGAGAGAAGTTAGTCCATCAGATGTGAGAGAAAACTCCAACCTTGAGTCATCTCAGTTGACTCTTCAAGCAGAATTT
GATATGTCTGCCATACCTAGAAAACGTGGTAGACCAAGAAAAATCAATCCATCTGAAGATGTAGGATCTAAGGCTGTTAA
GGAAGAGAGAAGCCCCAAGAAGAAAGAGGCTCCCAGCATTAAAAGGAGATCTACAAGAAATACCCCAGCTAAAAGTGAAA
ATGTTGATGTTGGAAAACCAGCTTTAGGAAAATCCATTTTAGTGCCAAACGAGGAACTTTCGATGGTGATGAGCTCTAAG
AAAAAACTTACAAAAAAGACTGAAAGTCAAAGTCAAAAACGTTCATTGCACTCAGTATCAGAAGAACGCACAGATGAAAT
GACACATAAAGAAACAAATGAGCAGGAAGAAAGATTGCTCGCCACAGCTTCCTTCACTAAATCATCCCGCAGCACCAGGA
CTCAGTCTAGCAAGGCCATCTTGTTGCCGGACCTTTCTGAACCAAACAATGAGCCTTTATTTTCTCCAGCGGCAGAAGTT
CCAAGAAAGCAAAAGCTAAAAAAATAGAGGTTCCTGCACAGCTGAAAGAATTAGTTTCGGATTTATCTTCTCAGTTTGTC
ATCTCACCTCCTGCTTTAAGGAGCAGACAAAAAAACACATCCAATAAGAACAAGCTTGAAGATGAACTGAAAGATGATGC
ACAATCAGTAGAAACTGTGGGAAAGCCAAAAGCGAAAGGAATCAGGACG

Alignment

ORF - retro_hsap_2339 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.55 %
• Parental protein coverage: 96.88 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MAAERRCGSMRDLRAQVTSGLLPFPEVTLQALGEDEITLESVLRGKFAAGKNGLACLACGPQLEVVNSIT
          MAAERRCGSMRDLRAQVTSGLLPFPEVTLQALGEDEITLESVLRGKFAAGKNGLACLACGPQLEVVNSIT
Retrocopy MAAERRCGSMRDLRAQVTSGLLPFPEVTLQALGEDEITLESVLRGKFAAGKNGLACLACGPQLEVVNSIT

Parental  GERLSAYRFSGVNEQPPVVLAVKEFSWQKRTGLLIGLEETEGSVLCLYDLGISKVVKAVVLPGRVTAIEP
          GERLSAYRFSGVNEQPPVVLAVKEFSWQKRTGLLIGLEETEGSVLCLYDLGISKVVKAVVLPGRVTAIEP
Retrocopy GERLSAYRFSGVNEQPPVVLAVKEFSWQKRTGLLIGLEETEGSVLCLYDLGISKVVKAVVLPGRVTAIEP

Parental  IINHGGASASTQHLHPSLRWLFGVAAVVTDVGQILLVDLCLDDLSCNQNEVEASDLEVLTGIPAEVPHIR
          IINHGGASASTQHLHPSLRWLFGVAAVVTDVGQILL.DLCLDDLSCNQNEVEASDLEVLTGIPAEVPHIR
Retrocopy IINHGGASASTQHLHPSLRWLFGVAAVVTDVGQILLIDLCLDDLSCNQNEVEASDLEVLTGIPAEVPHIR

Parental  ESVMRQGRHLCFQLVSPTGTAVSTLSYISRTNQLAVGFSDGYLALWNMKSMKREYYIQLESGQVPVYAVT
          ESVMR.GRHLCFQLVSPTGTAVSTLSYISRTNQLA.GFSDGYLALWNMKSMKREYYIQLESGQVPVYAVT
Retrocopy ESVMREGRHLCFQLVSPTGTAVSTLSYISRTNQLAAGFSDGYLALWNMKSMKREYYIQLESGQVPVYAVT

Parental  FQEPENDPRNCCYLWAVQSTQDSEGDVLSLHLLQLAFGNRKCLASGQILYEGLEYCEERYTLDLTGGMFP
          FQEPEND.RNCCYLWAVQSTQDSEGDVLSLHLLQLAFGNRKCLASGQILYE.LEYCEERYTLDLTGGMFP
Retrocopy FQEPENDRRNCCYLWAVQSTQDSEGDVLSLHLLQLAFGNRKCLASGQILYEWLEYCEERYTLDLTGGMFP

Parental  LRGQTSNTKLLGCQSIEKFRSHGDREEGVNEALSPDTSVSVFTWQVNIYGQGKPSVYLGLFDINRWYHAQ
          LRGQTSNTKLLGCQSIEKFRSHGDREEGVNEALSPDTSVSVFTWQVNIYGQGKPSVYLGLFDINRWYHAQ
Retrocopy LRGQTSNTKLLGCQSIEKFRSHGDREEGVNEALSPDTSVSVFTWQVNIYGQGKPSVYLGLFDINRWYHAQ

Parental  MPDSLRSGEYLHNCSYFALWSLESVVSRTSPHGILDILVHERSLNRGVPPSYPPPEQFFNPSTYNFDATC
          MPDSLRSGEYLHNCSYFALWSLESVVSRTSPHGILDILVHERSLNRGVPPSYPPPEQFFNPSTYNFDATC
Retrocopy MPDSLRSGEYLHNCSYFALWSLESVVSRTSPHGILDILVHERSLNRGVPPSYPPPEQFFNPSTYNFDATC

Parental  LLNSGVVHLTCTGFQKETLTFLKKSGPSLNELIPDGYNRCLVAGLLSPRFVDVQPSSLSQEEQLEAILSA
          LLNSGVVHLTCTGFQKETLTFLKKSGPSLNELIP.GYNR.LVAGLLSP.FVDVQPSSLSQEEQLEAILS.
Retrocopy LLNSGVVHLTCTGFQKETLTFLKKSGPSLNELIPGGYNRRLVAGLLSPSFVDVQPSSLSQEEQLEAILST

Parental  AIQTSSLGLLTGYIRRWITEEQPNSATNLRFVLEWTWNKVVLTKEEFDRLCVPLFDGSCHFMDPQTIQSI
          AIQTSSLGLLTGYIRRWITEEQPNSATNLRFVLEWTWNKVVLTKEEFDRLCVPLFDGSCHFMDPQTIQSI
Retrocopy AIQTSSLGLLTGYIRRWITEEQPNSATNLRFVLEWTWNKVVLTKEEFDRLCVPLFDGSCHFMDPQTIQSI

Parental  QQCYLLLSNLNIVLSCFASEAREITERGLIDLSNKFVVSHLICQYAQVVLWFSHSGLLPEGIDDSVQLSR
          QQCYLLLSNLNIVLSCFASEAREITERGLIDLSNKFVVSHLICQYAQVVLWFSHSGLLPEGIDDSVQLSR
Retrocopy QQCYLLLSNLNIVLSCFASEAREITERGLIDLSNKFVVSHLICQYAQVVLWFSHSGLLPEGIDDSVQLSR

Parental  LCYNYPVIQNYYTSRRQKFERLSRGKWNPDCLMIDGLVSQLGERIEKLWKRDEGGTGKYPPASLHAVLDM
          LCYNYPVIQNYYTSRRQKFERLSRGKWNPDCLMIDGLVSQLGERIEKLWKRDEGGTGKYPPASLHAVLDM
Retrocopy LCYNYPVIQNYYTSRRQKFERLSRGKWNPDCLMIDGLVSQLGERIEKLWKRDEGGTGKYPPASLHAVLDM

Parental  YLLDGVTEAAKHSITIYLLLDIMYSFPNKTDTPIESFPTVFAISWGQVKLIQGF-WLIDHNDYESGLDLL
          YLLDGVTEAAKHSITIYLLLDIMYSFPNKTDTPIESFPTVFAISWGQVKLIQGF.WLIDHNDYESGLDLL
Retrocopy YLLDGVTEAAKHSITIYLLLDIMYSFPNKTDTPIESFPTVFAISWGQVKLIQGF<WLIDHNDYESGLDLL

Parental  FHPATAKPLSWQHSKIIQAFMSQGEHRQALRYIQTMKPTVSSGNDVILHLTVLLFNRCMVEAWNFLRQHC
          FHPATAKPLSWQHSKIIQAFMSQGEHRQALRYIQTMKPTVSSG.DVILHLTVLLF.RCMVEAWNFLRQHC
Retrocopy FHPATAKPLSWQHSKIIQAFMSQGEHRQALRYIQTMKPTVSSGSDVILHLTVLLFSRCMVEAWNFLRQHC

Parental  NRLNIEELLKHMYEVCQEMGLMEDLLKLPFTDTEQECLVKFLQSSASVQNHEFLLVHHLQRANYVPALKL
          NRLNIEELLKHMYEVCQEMGLMEDLLKLPFTDTEQECLVKFLQSSAS.Q.HEFLLVHHLQ.ANYVP.LKL
Retrocopy NRLNIEELLKHMYEVCQEMGLMEDLLKLPFTDTEQECLVKFLQSSASIQSHEFLLVHHLQHANYVPPLKL

Parental  NQTLKINVMNDRDPRLRERSLARNSILDQYGKILPRVHRKLAIERAKPYHLSTSSVFRLVSRPKPLSAVP
          NQTLKINVMNDRDPRLRERSLARNSILDQYGKILPRVHRKLAIERAKPYHLSTSSVFRLVSRPKPLSAVP
Retrocopy NQTLKINVMNDRDPRLRERSLARNSILDQYGKILPRVHRKLAIERAKPYHLSTSSVFRLVSRPKPLSAVP

Parental  KQVVTGTVLTRSVFINNVLSKIGEVWASKEPINSTTPFNSSKIEEPSPIVYSLPAPELPEAFFGTPISKA
          KQVVTGTVLTRSVFINNVLSKIGEVWASKEPINSTTPFNSSKIEEPSPIVYSLPAPELPEAFFGTPISKA
Retrocopy KQVVTGTVLTRSVFINNVLSKIGEVWASKEPINSTTPFNSSKIEEPSPIVYSLPAPELPEAFFGTPISKA

Parental  SQKISRLLDLVVQPVPRPSQCSEFIQQSSMKSPLYLVSRSLPSSSQLKGSPQAISRASELHLLETPLVVK
          SQKISRLLDLVVQPVPRPSQCSEFIQQSSMKSPLYLVSRSLPSSSQLKGSPQAISRASELHLLETPLVV.
Retrocopy SQKISRLLDLVVQPVPRPSQCSEFIQQSSMKSPLYLVSRSLPSSSQLKGSPQAISRASELHLLETPLVVN

Parental  KAKSLAMSVTTSGFSEFTPQSILRSTLRSTPLASPSPSPGRSPQRLKETRISFVEEDVHPKWIPGAADDS
          KAKSLAMSVTTSGFSEFTPQSILRSTLRSTPLASPSPSPGRSPQRLKETRISFVEEDVHPKWIPGAADDS
Retrocopy KAKSLAMSVTTSGFSEFTPQSILRSTLRSTPLASPSPSPGRSPQRLKETRISFVEEDVHPKWIPGAADDS

Parental  KLEVFTTPKKCAVPVETEWLKSKDRTTSFFLNSPEKEHQEMDEGSQSLEKLDVSKGNSSVSITSDETTLE
          KLEVFTTPKKCAVPVETEWLKSKDRTTSFFLNSPEKEHQEMD.GSQSLEKLDVSKGNSSVSITSDETTLE
Retrocopy KLEVFTTPKKCAVPVETEWLKSKDRTTSFFLNSPEKEHQEMDVGSQSLEKLDVSKGNSSVSITSDETTLE

Parental  YQDAPSPEDLEETVFTASKPKSSSTALTTNVTEQTEKDGDKDVFASEVTPSDLQKQMGNLEDAET-KDLL
          YQDA.SPEDLEETVFTASKPKSSSTALTTNVTEQTEKDGDKDVFASEVTPSDLQKQMGNLEDAET.KDLL
Retrocopy YQDALSPEDLEETVFTASKPKSSSTALTTNVTEQTEKDGDKDVFASEVTPSDLQKQMGNLEDAET<KDLL

Parental  VAAEAFSELNHLSPVQGTEASLCAPSVYEGKIFTQKSKVPVLDEGLTSVETYTPAIRANDNKSMADVLGD
          VAAEAFSELNHLSPVQGTEASLCAPSVYEGKIFTQKSKVPVLDEGLTSVETYT.AIRANDNKSMADVLGD
Retrocopy VAAEAFSELNHLSPVQGTEASLCAPSVYEGKIFTQKSKVPVLDEGLTSVETYTSAIRANDNKSMADVLGD

Parental  GGNSSLTISEGPIVSERRLNQEVALNLKEDHEVEVGVLKESVDLPEEKLPISDSPPDTQEIHVIEQEKLE
          GGNSSLTISEGPIVSERRLNQEVALNLKEDHEVEVGVLKESVDLPEEKLPISDSPPDTQEIHVIEQEKLE
Retrocopy GGNSSLTISEGPIVSERRLNQEVALNLKEDHEVEVGVLKESVDLPEEKLPISDSPPDTQEIHVIEQEKLE

Parental  AQDSGEEARNLSFNELYPSGTLKLQYNFDTIDQQFCDLADNKDTAECDIAEVDGELFVAQSNFTLILEGE
          AQDSGEEARNLSFNELYPSGTLKLQYNFDTIDQQFCDLADNKDTAECDIAEVDGELFVA.SNFTLILEGE
Retrocopy AQDSGEEARNLSFNELYPSGTLKLQYNFDTIDQQFCDLADNKDTAECDIAEVDGELFVAPSNFTLILEGE

Parental  EGEVEPGDFASSDVLPKAANTATEEKLVCSGENDNHGQIANLPSAVTSDQKSQKVDTLPYVPEPIKVAIA
          EGEVEPGDFASSDVLPKAANTATEEKLVCSG.NDNHGQ.ANLPSAVTSDQKSQKV.TLPYVPEPIKVAIA
Retrocopy EGEVEPGDFASSDVLPKAANTATEEKLVCSGKNDNHGQVANLPSAVTSDQKSQKVETLPYVPEPIKVAIA

Parental  ENLLDVIKDTRSKEITSDTMEQSIHETIPLVSQNIMCPTKLVKSAFKTAQETSTMTMNVSQVDDVVSSKT
          ENLLDVIKDTRSKEITSDTMEQSIHETIPLVSQNIMCPTKLVKSAFKTAQETSTMTMNVSQVDDVVSSKT
Retrocopy ENLLDVIKDTRSKEITSDTMEQSIHETIPLVSQNIMCPTKLVKSAFKTAQETSTMTMNVSQVDDVVSSKT

Parental  RTRGQRIQNVNVKSAQQEASADVATPKMPGQSVRKKTRKAKEISEASENIYSDVRGLSQNQQIPQNSVTP
          RTRGQRIQNVNVKSAQQEASADVATPKMPGQSV.KKTRKAKEISEASENIYSDVRGLSQNQQIPQNSVTP
Retrocopy RTRGQRIQNVNVKSAQQEASADVATPKMPGQSVKKKTRKAKEISEASENIYSDVRGLSQNQQIPQNSVTP

Parental  RRGRRKKEVNQDILENTSSVEQELQITTGRESKRLKSSQLLEPAVEETTKKEVKVSSVTKRTPRRIKRSV
          RRGRRKKEVNQDILENTSSVEQELQITTGRESKRLKSSQLLEPAVEETTKKEVKVSSVTKRTPR.IKRSV
Retrocopy RRGRRKKEVNQDILENTSSVEQELQITTGRESKRLKSSQLLEPAVEETTKKEVKVSSVTKRTPRTIKRSV

Parental  ENQESVEIINDLKVSTVTSPSRMIRKLRSTNLDASENTGNKQDDKSSDKQLRIKHVRRVRGREVSPSDVR
          ENQESVEIINDLKVSTVTSPSRMIRKLRS..LDASENTGNKQ.DKSSDKQL.IKH.RRVRGREVSPSDVR
Retrocopy ENQESVEIINDLKVSTVTSPSRMIRKLRSAHLDASENTGNKQEDKSSDKQLPIKHIRRVRGREVSPSDVR

Parental  EDSNLESSQLTVQAEFDMSAIPRKRGRPRKINPSEDVGSKAVKEERSPKKKEAPSIRRRSTRNTPAKSEN
          E.SNLESSQLT.QAEFDMSAIPRKRGRPRKINPSEDVGSKAVKEERSPKKKEAPSI.RRSTRNTPAKSEN
Retrocopy ENSNLESSQLTLQAEFDMSAIPRKRGRPRKINPSEDVGSKAVKEERSPKKKEAPSIKRRSTRNTPAKSEN

Parental  VDVGKPALGKSILVPNEELSMVMSSKKKLTKKTESQSQKRSLHSVSEERTDEMTHKETNEQEERLLATAS
          VDVGKPALGKSILVPNEELSMVMSSK.............RSLHSVSEERTDEMTHKETNEQEERLLATAS
Retrocopy VDVGKPALGKSILVPNEELSMVMSSKXXXXXXXXXXXXXRSLHSVSEERTDEMTHKETNEQEERLLATAS

Parental  FTKSSRSSRTRSSKAILLPDLSEPNNEPLFSPASEVPR-KAKAKKIEVPAQLKELVSDLSSQFVISPPAL
          FTKSSRS.RT.SSKAILLPDLSEPNNEPLFSPA.EVPR.KAKAKKIEVPAQLKELVSDLSSQFVISPPAL
Retrocopy FTKSSRSTRTQSSKAILLPDLSEPNNEPLFSPAAEVPR<KAKAKKIEVPAQLKELVSDLSSQFVISPPAL

Parental  RSRQKNTSNKNKLEDELKDDAQSVETLGKPKAKRIRT
          RSRQKNTSNKNKLEDELKDDAQSVET.GKPKAK.IRT
Retrocopy RSRQKNTSNKNKLEDELKDDAQSVETVGKPKAKGIRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
bodymap2_adipose	0.20 RPM	73.83 RPM
bodymap2_adrenal	0.57 RPM	47.63 RPM
bodymap2_brain	0.28 RPM	42.52 RPM
bodymap2_breast	0.86 RPM	39.03 RPM
bodymap2_colon	0.19 RPM	60.87 RPM
bodymap2_heart	1.05 RPM	47.72 RPM
bodymap2_kidney	0.35 RPM	46.18 RPM
bodymap2_liver	0.13 RPM	19.01 RPM
bodymap2_lung	0.25 RPM	50.60 RPM
bodymap2_lymph_node	0.07 RPM	45.99 RPM
bodymap2_ovary	0.71 RPM	70.67 RPM
bodymap2_prostate	1.28 RPM	63.88 RPM
bodymap2_skeletal_muscle	1.55 RPM	40.90 RPM
bodymap2_testis	4.79 RPM	167.94 RPM
bodymap2_thyroid	0.56 RPM	67.85 RPM
bodymap2_white_blood_cells	0.14 RPM	85.58 RPM

ChIP-Seq

RNA Polymerase II actvity near the 5' end of retro_hsap_2339 was not detected

EST

2 EST(s) were mapped to retro_hsap_2339 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
DB336058	162362408	162362818	99.8	409	1	408
EC545575	162361123	162361225	100	102	0	102

TSS

No TSS is located nearby retro_hsap_2339 retrocopy 5' end.

Lab

retro_hsap_2339 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_hsap_2339 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000153207	1 retrocopy	retro_hsap_2339 ,

Population studies

Expression level across human populations :

Library	Retrogene expression
CEU_NA11831	0.24 RPM
CEU_NA11843	0.74 RPM
CEU_NA11930	0.59 RPM
CEU_NA12004	0.42 RPM
CEU_NA12400	0.11 RPM
CEU_NA12751	0.27 RPM
CEU_NA12760	0.45 RPM
CEU_NA12827	0.52 RPM
CEU_NA12872	0.08 RPM
CEU_NA12873	1.02 RPM
FIN_HG00183	0.74 RPM
FIN_HG00277	0.63 RPM
FIN_HG00315	1.21 RPM
FIN_HG00321	0.60 RPM
FIN_HG00328	0.59 RPM
FIN_HG00338	0.34 RPM
FIN_HG00349	1.93 RPM
FIN_HG00375	0.51 RPM
FIN_HG00377	0.28 RPM
FIN_HG00378	0.23 RPM
GBR_HG00099	0.58 RPM
GBR_HG00111	0.34 RPM
GBR_HG00114	0.21 RPM
GBR_HG00119	0.74 RPM
GBR_HG00131	0.37 RPM
GBR_HG00133	0.24 RPM
GBR_HG00134	0.04 RPM
GBR_HG00137	0.19 RPM
GBR_HG00142	0.25 RPM
GBR_HG00143	0.26 RPM
TSI_NA20512	0.40 RPM
TSI_NA20513	1.31 RPM
TSI_NA20518	0.56 RPM
TSI_NA20532	0.68 RPM
TSI_NA20538	0.83 RPM
TSI_NA20756	0.52 RPM
TSI_NA20765	0.73 RPM
TSI_NA20771	0.48 RPM
TSI_NA20786	0.18 RPM
TSI_NA20798	0.19 RPM
YRI_NA18870	0.37 RPM
YRI_NA18907	0.45 RPM
YRI_NA18916	0.74 RPM
YRI_NA19093	0.26 RPM
YRI_NA19099	0.53 RPM
YRI_NA19114	0.42 RPM
YRI_NA19118	0.48 RPM
YRI_NA19213	0.50 RPM
YRI_NA19214	0.25 RPM
YRI_NA19223	0.24 RPM

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Indel association:

No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (PubMed).