RetrogeneDB ID: retro_gmor_30

Retrocopy location

• Organism: Cod (Gadus morhua)
• Coordinates: contig296217:411..744(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGMOG00000012106
• Aliases: None
• Description: None

Sequence

>retro_gmor_30
ATCCGGAGGGTTTCCCTGGCTTTGAGCCGCCGCATCGCTAGTTACGTCCACCTCCCGAACGAGGAAGAGGCGGCGGCGAT
GAAGGAACGGTTCCGCCAGGCGTCCGGTATGCCTGGGATCGTGGGCTGCATAGACGGGACACATGTGCAGATCCAGGCCC
CACATGAGAACGAGTATTTGTACGTTAATCGAAAAGGTTACCATTCGATTAACGTACAAATAGCATGTGACGCAAATTAT
AACATAATTAATTTGGTGGCGAGATGGCCTGGATCCACCCACGATTCCCGCATCCTCCGGGAGAGTGCGTTATTACAGGA
CTTCGAGGAAGGA

Alignment

ORF - retro_gmor_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.15 %
• Parental protein coverage: 54.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LRKVCLALKRLLRNFIVFPGHKPTRRMKMEFHQLSGFPNVIGCIDGTQVPILAPSINEADYVNRKGYHSI
          .R.V.LAL.R........P.......MK..F.Q.SG.P...GCIDGT.V.I.AP..NE..YVNRKGYHSI
Retrocopy IRRVSLALSRRIASYVHLPNEEEAAAMKERFRQASGMPGIVGCIDGTHVQIQAPHENEYLYVNRKGYHSI

Parental  NVQMICDASHMITNVEA-WPGSVHDARMYRESNLSRKFQEG
          NVQ..CDA...I.N..A.WPGS.HD.R..RES.L...F.EG
Retrocopy NVQIACDANYNIINLVARWPGSTHDSRILRESALLQDFEEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Gadus morhua was not studied using RNA-Seq expression data.

ChIP-Seq

Gadus morhua was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_gmor_30 retrocopy.

TSS

Gadus morhua was not studied using FANTOM5 data.

Lab

retro_gmor_30 was not experimentally validated.

Homology

Retrocopy orthology:

Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Gasterosteus aculeatus	ENSGACG00000017629	1 retrocopy	retro_gacu_21,
Gadus morhua	ENSGMOG00000009026	1 retrocopy	retro_gmor_19,
Gadus morhua	ENSGMOG00000012106	1 retrocopy	retro_gmor_30 ,
Gadus morhua	ENSGMOG00000012261	1 retrocopy	retro_gmor_35,