RetrogeneDB ID: retro_gmax_26

Retrocopy location

• Organism: Soybean (Glycine max)
• Coordinates: 14:17430566..17430912(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GLYMA17G09900
• Aliases: None
• Description: None

Sequence

>retro_gmax_26
GCCCAAATTCTTTGTTTCTCTCACTTCTGTTTGGTCTCTCAGTTTTACTCTCCTTGCGGCGCTGCAACTCCCACTCTTGT
TCTCGAACTCTCATTCTCACTCTCCCCGTCGTGTTGTGTTTGTTTGATTGGTCTTCTTTCGTTAGGTACACCTTCAAGAG
CTTTGATCTTCTTCGTCGTGCATGACACACACTTCCTTCTCCAAAGAAAACAACAAAGCTTTCATCATTCTCAGCGCCAA
CGTCATCGAAACCTCCATCTCTTTCCATCTGCTCTCCAAAGATGTTGATGTTTCCTCCAAGGAGCTGAACCGTCGATTGT
CCCAAATCACCAACATGGACTTCTCT

Alignment

ORF - retro_gmax_26 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.66 %
• Parental protein coverage: 62.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SSIRSFTIFTLFLIAILPHGHATTPTSKLRLK-PLSSPFSTALETLQKQLGYTFKSIDLLRRA-MTHASF
          ..I..F..F.L......P.G.A.TPT..L.L...L..P....L........YTFKS.DLLRRA.MTH.SF
Retrocopy AQILCFSHFCLVSQFYSPCG-AATPTLVLELS<ILTLPVVLCLFDWSSFVRYTFKSFDLLRRA<MTHTSF

Parental  SEENNKAFAILGASVIETSVSFHLLSRDVDLSSKELNRRLSQITNVDSS
          S.ENNKAF.IL.A.VIETS.SFHLLS.DVD.SSKELNRRLSQITN.D.S
Retrocopy SKENNKAFIILSANVIETSISFHLLSKDVDVSSKELNRRLSQITNMDFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Glycine max was not studied using RNA-Seq expression data.

ChIP-Seq

Glycine max was not studied using ChIP-Seq data.

EST

Glycine max was not studied using EST data.

TSS

Glycine max was not studied using FANTOM5 data.

Lab

retro_gmax_26 was not experimentally validated.

Homology

Retrocopy orthology:

Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Glycine max	GLYMA17G09900	1 retrocopy	retro_gmax_26 ,