RetrogeneDB ID: retro_gmax_24

Retrocopy location

• Organism: Soybean (Glycine max)
• Coordinates: 13:30735989..30736278(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GLYMA18G43336
• Aliases: None
• Description: None

Sequence

>retro_gmax_24
ATTTACAATGAAGTTAGTAAGTTATTTGCTGTCAGGTGGAAGGATGTACTTGACGACGTATGACATTTGGTTGACAAGGA
TGGGAATTATCATAACATTGTTTACAACAAAAATTTGGACCAATCAACCATTGTAGTAGGGTGGACAACACTAAGAGATT
TTTATCAGCTGACCGGAGATCATCTAGTGTCCTTAACTCATTATGGTAAGAGTGCATTTTTTCTTACCATATTCAAGATC
AATTGTCTGCCCAAATCATTCCCAAGATGACACTCATTATACCATCAAG

Alignment

ORF - retro_gmax_24 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.43 %
• Parental protein coverage: 59.17 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IFGEVGKVYAVKWKDVLDSIWHLVDKDENYHNIVYNQDLNQPVIVAGWITLRNFYQLTGNHLVSLHHYVL
          I..EV.K..AV.WKDVLD...HLVDKD.NYHNIVYN..L.Q..IV.GW.TLR.FYQLTG.HLVSL.HY..
Retrocopy IYNEVSKLFAVRWKDVLDDV*HLVDKDGNYHNIVYNKNLDQSTIVVGWTTLRDFYQLTGDHLVSLTHY--

Parental  GSVTFKVYLTEQKVSCSSLDVP-SVMHYFLK
          G...F...LT..K..C.....P....HY..K
Retrocopy GKSAF--FLTIFKINCLPKSFP>DDTHYTIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Glycine max was not studied using RNA-Seq expression data.

ChIP-Seq

Glycine max was not studied using ChIP-Seq data.

EST

Glycine max was not studied using EST data.

TSS

Glycine max was not studied using FANTOM5 data.

Lab

retro_gmax_24 was not experimentally validated.

Homology

Retrocopy orthology:

Glycine max does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Glycine max	GLYMA18G43336	2 retrocopies	retro_gmax_24 , retro_gmax_32,