RetrogeneDB ID: retro_ggor_910

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:132247366..132247698(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PLAC8
• Ensembl ID: ENSGGOG00000007464
• Aliases: None
• Description: None

Sequence

>retro_ggor_910
GAGGCGCCGATGGTCGTTGTGACCCAACCTGGAGTCGGTCTCGGTCCGGCACCCCAGAACTCCAACTGGCAGACAGGCAT
GTGTGACTGCTTCAGCAACTGTGGAGTCTGTCTCTGTGGCACGTTTTGTTTCCCGTGCCTTGGGTGTCAAGTTGCAGCTG
ATATGAATGAATGCTGTGTGGAGCAAGCGTCGCAATGAGGACTGTCTACAGGACCTGATATGGCATCCCTGGATCTATTT
GTGATGATTATATGGCAACCCTTTGAGGTCCTCATTGTACTCTTTGCCAAATCAAGAGAGATATCAACAGAAGGAGAGTC
ATGCGTACTTTC

Alignment

ORF - retro_ggor_910 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.38 %
• Parental protein coverage: 97.39 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECC-LCGTSVAMRT
          .AP.VVVTQPGVG.GPAPQNSNWQTGMCDCFS.CGVCLCGTFCFPCLGCQVAADMNE.C.LCG.SVAMRT
Retrocopy EAPMVVVTQPGVGLGPAPQNSNWQTGMCDCFSNCGVCLCGTFCFPCLGCQVAADMNE-C<LCGASVAMRT

Parental  LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF
          .YRT.YGIPGSICDDYMATL..PHCTLCQIKRDINRRR.MRTF
Retrocopy VYRT*YGIPGSICDDYMATL*GPHCTLCQIKRDINRRRVMRTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.67 RPM	0.10 RPM
SRP007412_cerebellum	0.63 RPM	0.08 RPM
SRP007412_heart	0.00 RPM	0.06 RPM
SRP007412_kidney	0.37 RPM	0.70 RPM
SRP007412_liver	0.26 RPM	4.06 RPM
SRP007412_testis	0.73 RPM	0.21 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_910 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_910 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000145287	1 retrocopy	retro_hsap_1165,
Gorilla gorilla	ENSGGOG00000007464	1 retrocopy	retro_ggor_910 ,
Monodelphis domestica	ENSMODG00000019309	1 retrocopy	retro_mdom_950,
Mus musculus	ENSMUSG00000029322	1 retrocopy	retro_mmus_1051,
Otolemur garnettii	ENSOGAG00000017232	1 retrocopy	retro_ogar_714,
Pan troglodytes	ENSPTRG00000016226	1 retrocopy	retro_ptro_800,
Rattus norvegicus	ENSRNOG00000002217	2 retrocopies	retro_rnor_1489, retro_rnor_1878,