RetrogeneDB ID: retro_ggor_653

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:63343353..63343698(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C5ORF63
• Ensembl ID: ENSGGOG00000006111
• Aliases: None
• Description: None

Sequence

>retro_ggor_653
ATGCTCTGGTTTCAAGGAAATAGCATGCAACTTGCCAGATCCTCCCTTGGACTCTTCTTGATAAACTGCTCCACCTCTAA
GACAACTCTGCCCATGCTGACCTTATTCACAAAGGACCCAGGCCCCCTTTGTGGTGAAGCCAAGGAAGTACTCAAGCCTT
ATAATAACAAGTTTATTTTACAGGAAGTGAACGTCACACTTCCAGAAAACTCTGCCTGGTATGAAAGGTATAAATTTGAC
ATTCCTGTCTTTCACTTGTGTGGCCAGTTTCTGATGATGCATCAAGAAAACACCTCAAAACTTGACAAACAGCTCCTGAA
ACTTGAGCAGCAAAGTACCGGAGGC

Alignment

ORF - retro_ggor_653 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.35 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLWFQGNSMQLARSSFGLFLRNCCASKTTPPVLTLFTKDSCPLCDEAKEVLKPYKNRFILQEVNITLPEN
          MLWFQGNSMQLARSS.GLFL.NC..SKTT.P.LTLFTKD..PLC.EAKEVLKPY.N.FILQEVN.TLPEN
Retrocopy MLWFQGNSMQLARSSLGLFLINCSTSKTTLPMLTLFTKDPGPLCGEAKEVLKPYNNKFILQEVNVTLPEN

Parental  SVWYERYKFDVPVFHLNGQFLMMHRVNTSKLEKQLLKLEQQSTGG
          S.WYERYKFD.PVFHL.GQFLMMH..NTSKL.KQLLKLEQQSTGG
Retrocopy SAWYERYKFDIPVFHLCGQFLMMHQENTSKLDKQLLKLEQQSTGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	3.07 RPM
SRP007412_cerebellum	0.08 RPM	3.15 RPM
SRP007412_heart	0.00 RPM	4.22 RPM
SRP007412_kidney	0.00 RPM	7.89 RPM
SRP007412_liver	0.00 RPM	7.12 RPM
SRP007412_testis	0.10 RPM	7.98 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_653 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_653 has 3 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_788
Pongo abelii	retro_pabe_746
Macaca mulatta	retro_mmul_1091

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000164241	1 retrocopy	retro_hsap_788,
Gorilla gorilla	ENSGGOG00000006111	1 retrocopy	retro_ggor_653 ,
Macaca mulatta	ENSMMUG00000009523	1 retrocopy	retro_mmul_1091,
Pongo abelii	ENSPPYG00000015732	1 retrocopy	retro_pabe_746,