RetrogeneDB ID: retro_ggor_2532

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 7:95051279..95051635(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS10
• Ensembl ID: ENSGGOG00000012808
• Aliases: None
• Description: None

Sequence

>retro_ggor_2532
CACGGTAAGGCTGTATTGGACAGTTATGAATATTTTGCTGTGCTTGATGCTAAAGAACTTGGTATCTCTATTAAAGTACA
CGAACTCCAAGGAAAATAGAGCGATTTACTCTTCTCATATCAGTGCATATTTACAAGAAGCACGGAGTTCAGTATGAAAT
GAGAACACTTTACAGATGTTTAGAGTTAGAACATCTAACTGGAAGCACAGCAGATGTCTACTTGGAATATATTCAGCGAA
ACTTACCTGAAAGGGTTGCCATGGAGGTAACAAAGACACAATTAGAACAGTTACCAGAGCACATCAAGGAGCCAATCTGG
GAAACACTATCAGAAGAAAAAGAAGAAAGCAAGTCT

Alignment

ORF - retro_ggor_2532 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.33 %
• Parental protein coverage: 59.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HDKAVLDSYEYFAVLAAKELGISIKVHE-PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGS
          H.KAVLDSYEYFAVL.AKELGISIKVHE..PRKIERFTLL.SVHIYKKH.VQYEMRTLYRCLELEHLTGS
Retrocopy HGKAVLDSYEYFAVLDAKELGISIKVHE<TPRKIERFTLLISVHIYKKHGVQYEMRTLYRCLELEHLTGS

Parental  TADVYLEYIQRNLPEGVAMEVTKTKLEQLPEHIKEPIWETLSEEKEESKS
          TADVYLEYIQRNLPE.VAMEVTKT.LEQLPEHIKEPIWETLSEEKEESKS
Retrocopy TADVYLEYIQRNLPERVAMEVTKTQLEQLPEHIKEPIWETLSEEKEESKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.58 RPM	13.86 RPM
SRP007412_cerebellum	0.35 RPM	10.36 RPM
SRP007412_heart	0.09 RPM	5.78 RPM
SRP007412_kidney	0.29 RPM	20.16 RPM
SRP007412_liver	0.18 RPM	10.92 RPM
SRP007412_testis	0.52 RPM	21.65 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2532 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2532 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000002081	1 retrocopy	retro_dord_412,
Homo sapiens	ENSG00000048544	1 retrocopy	retro_hsap_4157,
Gorilla gorilla	ENSGGOG00000012808	1 retrocopy	retro_ggor_2532 ,
Microcebus murinus	ENSMICG00000011379	1 retrocopy	retro_mmur_321,
Macaca mulatta	ENSMMUG00000014661	1 retrocopy	retro_mmul_48,
Mus musculus	ENSMUSG00000034729	1 retrocopy	retro_mmus_1654,
Nomascus leucogenys	ENSNLEG00000004800	1 retrocopy	retro_nleu_1385,
Oryctolagus cuniculus	ENSOCUG00000016697	1 retrocopy	retro_ocun_1141,
Pongo abelii	ENSPPYG00000016613	1 retrocopy	retro_pabe_3456,
Pan troglodytes	ENSPTRG00000018169	1 retrocopy	retro_ptro_2826,
Rattus norvegicus	ENSRNOG00000022609	1 retrocopy	retro_rnor_2284,
Ictidomys tridecemlineatus	ENSSTOG00000027016	1 retrocopy	retro_itri_1183,