RetrogeneDB ID: retro_fcat_923

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B3:91975734..91976038(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UNC119
• Ensembl ID: ENSFCAG00000024212
• Aliases: None
• Description: unc-119 homolog (C. elegans) [Source:HGNC Symbol;Acc:12565]

Sequence

>retro_fcat_923
TCACCGCTGGCAACTTACCTATGCTTACGCGAGGAGAATATCTACAAAATCGACCTCATCAGGTTCAAGATTTGAGACAC
GGATTCAGGCACTGTCCTCTTTGAAATCAAGAAGCCCCAGCCTCAGAGTGGTTGCTCATCAACCGGCGGGACCTGGACCC
CAATGCTGGGTGCTTTGTCCACCATGAGTACACACCTGCCTTCCTGGGTCAGAGGCAGGTGGGAGCCACGGTGGAGTCCA
CGGTGGGAGACAAGTCTGTCAACCACTTCCTCATGATTCAGAGGCACTAAATCGCAACCAGCTC

Alignment

ORF - retro_fcat_923 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.38 %
• Parental protein coverage: 56.74 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SPL-DYLCSPEENIYKIDFIRFKIRDMDSGTVLFEIKKP-PASERLPINRRDLDPNAGRFVRYQFTPAFL
          SPL..YLC..EENIYKID.IRFKI.D.DSGTVLFEIKKP.PASE.L.INRRDLDPNAG.FV....TPAFL
Retrocopy SPLATYLCLREENIYKIDLIRFKI*DTDSGTVLFEIKKP<PASEWLLINRRDLDPNAGCFVHHEYTPAFL

Parental  RLRQVGATVEFTVGDKPVNNFRMIERH-YFRNQL
          ..R............K.VN.F.MI.RH...RNQL
Retrocopy GQRXXXXXXXXXXXXKSVNHFLMIQRH<LNRNQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	10.79 RPM
SRP017611_kidney	0.00 RPM	14.02 RPM
SRP017611_liver	0.00 RPM	5.16 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_923 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_923 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004930	1 retrocopy	retro_amel_1529,
Callithrix jacchus	ENSCJAG00000012712	1 retrocopy	retro_cjac_2311,
Cavia porcellus	ENSCPOG00000002937	1 retrocopy	retro_cpor_939,
Felis catus	ENSFCAG00000024212	1 retrocopy	retro_fcat_923 ,
Myotis lucifugus	ENSMLUG00000012359	1 retrocopy	retro_mluc_2325,
Vicugna pacos	ENSVPAG00000004356	1 retrocopy	retro_vpac_402,