RetrogeneDB ID: retro_fcat_8

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: A1:33607187..33607532(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000025685
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000007450
• Aliases: None
• Description: None

Sequence

>retro_fcat_8
ATGTCCTCCCCTGAAATTGCTTCCCTATCAAGGGGGCAAATGAAAGCACGAAGCTCCTCTAAACCCCAGAAGTACTGCAG
AGTGTTGCCAGGGGGAAGTCAGGCTTGGGATTGGAGAGAAACAAAATCTGAGCATTATCCTTGTATGCTACCTGCAGGTG
TGGAGGAAGTTATCAAGAAGGATGTGCAGATGCTTGCGATTGATCAAGGGATGGGTGAGGTCTTGAAGGTGCCTCCATCA
ACTGGGGAGTATCTTGAAACCCAAGGAACTGGTGTGTGGGTCATCCAGACAGAGCTTGGCTGCCCAGGGTGTTGGGTGGG
AGGGCTCTTCTATTCCACCTGCTGA

Alignment

ORF - retro_fcat_8 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.35 %
• Parental protein coverage: 80.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSPEIASLSWGQMKVQGSTKTYKDCKVWPGGSRAWDWRETGTEHSPGVQPADVEEVVKKGVQTLVIGRG
          MSSPEIASLS.GQMK...S.K..K.C.V.PGGS.AWDWRET..EH.P...PA.VEEV.KK.VQ.L.I..G
Retrocopy MSSPEIASLSRGQMKARSSSKPQKYCRVLPGGSQAWDWRETKSEHYPCMLPAGVEEVIKKDVQMLAIDQG

Parental  MSEALKVPPSTVEYLEKQGIDVRVLQTE
          M.E.LKVPPST.EYLE.QG..V.V.QTE
Retrocopy MGEVLKVPPSTGEYLETQGTGVWVIQTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	9.64 RPM
SRP017611_kidney	0.00 RPM	23.91 RPM
SRP017611_liver	0.00 RPM	9.00 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_8 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_8 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002128	1 retrocopy	retro_amel_1604,
Callithrix jacchus	ENSCJAG00000014890	1 retrocopy	retro_cjac_165,
Echinops telfairi	ENSETEG00000006423	1 retrocopy	retro_etel_187,
Felis catus	ENSFCAG00000007450	1 retrocopy	retro_fcat_8 ,
Loxodonta africana	ENSLAFG00000000518	1 retrocopy	retro_lafr_784,
Microcebus murinus	ENSMICG00000000300	2 retrocopies	retro_mmur_157, retro_mmur_424,
Mustela putorius furo	ENSMPUG00000015932	1 retrocopy	retro_mputfur_1468,
Rattus norvegicus	ENSRNOG00000012584	1 retrocopy	retro_rnor_2097,
Tarsius syrichta	ENSTSYG00000002262	1 retrocopy	retro_tsyr_1886,
Tursiops truncatus	ENSTTRG00000007111	1 retrocopy	retro_ttru_406,