RetrogeneDB ID: retro_fcat_775

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:88035709..88036714(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000030894
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SRPR
• Ensembl ID: ENSFCAG00000011274
• Aliases: None
• Description: signal recognition particle receptor (docking protein) [Source:HGNC Symbol;Acc:11307]

Sequence

>retro_fcat_775
AGTTCTGATGGCCCTTTGGTTACCAGCAAAGCTGTCCCTGCTGAAAAGTCCGGTCTCCTGGTGGGGCCTGAGAATGGGGT
AGAACTTTCCAAAGAAGAGCTGATACGTAGGAAGCGAGAGGAATTCATTCAGAAGCATGGGAGAGGTATGGAGAAGTCCA
GCAAGTCCATGAAATCAGATGCTCCAAAGGAGAAGGGCAAAAAAGCACCCCGGGTGTGGGCTCTGGGTGGCTGTGCAAAC
AAGGAAGTCTTGGATTATAGCACCCCCACCACCAACGGAGCTCCTGAGGTTGCCCCACCTGAGGATATCAACTTGATTCG
AGGTACTGGGCCTGGGGGGCAGCTTCAGGATCTGGACTGCAGCAGCTCAGAGGATGAGGGGGCCACTCAAAACTCCACCA
AACCTAGTGCTACCAAGGGAACTCTGGGTGGCATGTTTGGGATGCTGAAGGGCCTTGTGGGGTCCAAGAGCTTGAGTCGT
GCAGACATGGAATCTGTGCTGGACAAAATGCGTGATCATCTCATTGCTAAGAATGTGGCAGCAGACATTGCAGTCCAGCT
CTGTGAATCTGTGGCCAACAAGTTGGAAGGGAAGGTGATGGGGACATTCAGCACGGTGACTTCCACAGTAAAGCAAGCCC
TACAGGAGTCCCTGGTACAGATTCTGCAGCCACAGCGTCGTGTTGACATGCTGCGGGATATCATGGATGCCCAGCGTCAT
CAGCGCCCTTACGTTGTCACCTTCTGCGGTGTTAATGGAGTGGGGAAGTCTACTAATCTTGCCAAGATTTCTTTCTGGCT
GTTAGAGAATGGCTTCAGTGTCCTCATTGCGGCCTGTGACACATTTCGTGCCGGGGCCGTGGAGCAGCTGCGTACACACA
CCCGGCGTTTGAGTGCCCTACACCCCCCAGAGAATCACGGTGGCCGCACTATGGTGCAGTTGTTTGAAAAGGGCTACGGC
AAGGACGCTGCTGGAATCGCCATGGAAGCAATTGCCTTTGGTCAA

Alignment

ORF - retro_fcat_775 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.4 %
• Parental protein coverage: 52.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SSDGPLVTSKAVPAEKSGLLVGPENGVELSKEELIRRKREEFIQKHGRGMEKSSKSMKSDAPKEKGKKAP
          SSDGPLVTSKAVPAEKSGLLVGPENGVELSKEELIRRKREEFIQKHGRGMEKSSKSMKSDAPKEKGKKAP
Retrocopy SSDGPLVTSKAVPAEKSGLLVGPENGVELSKEELIRRKREEFIQKHGRGMEKSSKSMKSDAPKEKGKKAP

Parental  RVWALGGCANKEVLDYSTPTTNGAPEVAPPEDINLIRGTGPGGQLQDLDCSSSEDEGATQNSTKPSATKG
          RVWALGGCANKEVLDYSTPTTNGAPEVAPPEDINLIRGTGPGGQLQDLDCSSSEDEGATQNSTKPSATKG
Retrocopy RVWALGGCANKEVLDYSTPTTNGAPEVAPPEDINLIRGTGPGGQLQDLDCSSSEDEGATQNSTKPSATKG

Parental  TLGGMFGMLKGLVGSKSLSRADMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTV
          TLGGMFGMLKGLVGSKSLSRADMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTV
Retrocopy TLGGMFGMLKGLVGSKSLSRADMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTV

Parental  KQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD
          KQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD
Retrocopy KQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD

Parental  TFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFAR
          TFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAF..
Retrocopy TFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.34 RPM	46.60 RPM
SRP017611_kidney	0.10 RPM	55.34 RPM
SRP017611_liver	0.20 RPM	70.76 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_775 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_775 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000011274	1 retrocopy	retro_fcat_775 ,
Monodelphis domestica	ENSMODG00000004576	1 retrocopy	retro_mdom_1093,
Mus musculus	ENSMUSG00000032042	1 retrocopy	retro_mmus_723,