RetrogeneDB ID: retro_fcat_763

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:74483336..74484207(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCNG1
• Ensembl ID: ENSFCAG00000027366
• Aliases: None
• Description: cyclin G1 [Source:HGNC Symbol;Acc:1592]

Sequence

>retro_fcat_763
ATGATAGAGGTACTGACAACTGACTCTCAGAAACTGTTACACCAGCTGAATGCTCTGTTGGAGCAGGAGTGGAGATGTCA
GCCAAAGGTCTGTGGCTTGAGACTAATTGCATCTGCACACGATAATGGCCTCAGAATGACTGCAAGGCTAAGGGACTTTG
AAGTAAAAGATCTTCCTAGTCTAACTCAGTTCTTTGGCTTTGACACAGAGACACTTTCTCTAGCTGTGAATTTACTGGAC
AGATTCCTGTCCCAAACGAAGGTACAGACCTTGGGTGTGTTGGGCTGAGCTGCTTCTGTTGGGCTATAAAACCAATAGAA
GAGGAAAGGAATGTCCCATTGGCAACTGACTTGATCCGAATAAGCCAGCATAGGTTCACGGTTTCAGACTTGATGAGAAT
GGAAAAGATTGCATCGGAGAAGGTATGTTGGAAAGTCAAAGCTACTATCGCCTTTCAATTTCTGCAACTCTACTATTCAT
TCACTCAAGAGAACTTGCCATTGAAAGAAGAATAGCCTTAATTTTGAAAGACTAGAAGCTCAACTTAAGGCATGCCACTG
CAGGATCATATTTCTAAAGCCAAGCCTTCTGTGTTGGCATTGTCTATCATTGCACTGGTGATCCAAGCACACAAGTGTGT
AGAGTTAACAGAAGGAATAGAATGTCTTTAGACACATTCCAAGATAAACGGCAGAGATTTGACCTTCTGGTAAGAGTTTG
TATCCAAGTGTTTAACTGAAATTCATCAAACAAGTGTTCCAGACCAAATGTTCAGAAGTTGAAATGGATTGTTTCTGGAT
GCACTGCATGACAGTTGAAGCATAGTTACTACAGAATAACCCACCTTCCAACAATTCCTGAAATGGTCCCT

Alignment

ORF - retro_fcat_763 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.67 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT
          MIEVLTT.DSQKLLHQLNALLEQE.RCQPKVCGLRLI.SAHDNGLRMTARLRDFEVKDL.SLTQFFGFDT
Retrocopy MIEVLTT-DSQKLLHQLNALLEQEWRCQPKVCGLRLIASAHDNGLRMTARLRDFEVKDLPSLTQFFGFDT

Parental  ETFSLAVNLLDRFLSKMKVQPKHLGCVG-LSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSDLMRMEK
          ET.SLAVNLLDRFLS..KVQ...LG..G.LSCF..A.K.IEEERNVPLATDLIRISQ.RFTVSDLMRMEK
Retrocopy ETLSLAVNLLDRFLSQTKVQT--LGVLG<LSCFCWAIKPIEEERNVPLATDLIRISQHRFTVSDLMRMEK

Parental  IVLEKVCWKVKATTAFQFLQLYYSLIQENLP-IER-KNSLNFERLEAQLKACHCRIIF-SKAKPSVLALS
          I..EKVCWKVKAT.AFQFLQLYYS..QENLP.IER.KNSLNFERLEAQLKACHCRIIF.SKAKPSVLALS
Retrocopy IASEKVCWKVKATIAFQFLQLYYSFTQENLP<IER<KNSLNFERLEAQLKACHCRIIF<SKAKPSVLALS

Parental  IIALEIQAQKCVELTEGIECLQTHSKISGRDLTFWQELVSKCLTEY-SSNKCSKPNVQKLKWIVSGRTAR
          IIAL.IQA.KCVELTEGIECL.THSKI.GRDLTFW.E.VSKCLTE..SSNKCS.PNVQKLKWIVSG.TA.
Retrocopy IIALVIQAHKCVELTEGIECL*THSKINGRDLTFW*EFVSKCLTEI<SSNKCSRPNVQKLKWIVSGCTA*

Parental  QLKHSYYRITHLPTIPEMVP
          QLKHSYYRITHLPTIPEMVP
Retrocopy QLKHSYYRITHLPTIPEMVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	66.91 RPM
SRP017611_kidney	0.10 RPM	283.00 RPM
SRP017611_liver	0.00 RPM	51.25 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_763 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_763 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006607	2 retrocopies	retro_btau_1064, retro_btau_763,
Canis familiaris	ENSCAFG00000017207	1 retrocopy	retro_cfam_1657,
Callithrix jacchus	ENSCJAG00000015341	1 retrocopy	retro_cjac_2319,
Dipodomys ordii	ENSDORG00000014293	1 retrocopy	retro_dord_486,
Equus caballus	ENSECAG00000018880	1 retrocopy	retro_ecab_152,
Felis catus	ENSFCAG00000026008	1 retrocopy	retro_fcat_1062,
Felis catus	ENSFCAG00000027366	1 retrocopy	retro_fcat_763 ,
Myotis lucifugus	ENSMLUG00000001667	1 retrocopy	retro_mluc_1341,
Monodelphis domestica	ENSMODG00000007651	1 retrocopy	retro_mdom_1018,
Mus musculus	ENSMUSG00000020326	1 retrocopy	retro_mmus_1534,
Oryctolagus cuniculus	ENSOCUG00000002129	3 retrocopies	retro_ocun_1287, retro_ocun_512, retro_ocun_615,
Otolemur garnettii	ENSOGAG00000007639	1 retrocopy	retro_ogar_2452,
Pteropus vampyrus	ENSPVAG00000017902	1 retrocopy	retro_pvam_1027,
Sarcophilus harrisii	ENSSHAG00000007465	2 retrocopies	retro_shar_328, retro_shar_490,
Vicugna pacos	ENSVPAG00000008340	1 retrocopy	retro_vpac_351,