RetrogeneDB ID: retro_fcat_761

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:68841888..68842374(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDCA5
• Ensembl ID: ENSFCAG00000028197
• Aliases: None
• Description: cell division cycle associated 5 [Source:HGNC Symbol;Acc:14626]

Sequence

>retro_fcat_761
AGGAAACCCATCATTTTGAAGATCATGGCCCATACTGTAGTGATCCCATCCATCCACATTACTCGAAGGAGCCGAGCCCA
AGGATTGCTTTTTTTCTTGGAGGAAAACAAACCCTCCAGCAAGAAGCCTGCTAGGGAGGACCTCTTTAAGACATGTAGCA
TCCCAGGCACTCCCACTGCCACTCCTGTGCTATACCCCCTGAATGTTGAGTCCAACTCCAGGAAAGAAAGATCTGGACGC
CAGAAACTTGGAAATGTCTAATAAAGGCAATCCTCCAGCCAGCTGGAGACCCTTGGCTCTGCCTCCACCTCCACTACAGG
CCATTGGTCTGTATTGCCTTGGCTTTGAGGGGCTGCTGAGGTCAGGAGACTTGGTCTCATCTGTGCTGTGTCCAAAGTTA
ATCGAAGTCCTCAGGGTCCCTGTGAAGCTCTGGGCCCCAGAGACAACTCCTTCCCAAATCTCCTGCCAGCCGTGAAAGAG
GAACAA

Alignment

ORF - retro_fcat_761 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.17 %
• Parental protein coverage: 64.68 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RKPIVLKKIVAHTVKTPSVHTPR--RSPRIAFFLEKENNPSSKEPAREEPFKTSSVPITPTPTPVLCPLN
          RKPI.LK.I.AHTV..PS.H..R..R.....FFLE.EN.PSSK.PARE..FKT.S.P.TPT.TPVL.PLN
Retrocopy RKPIILK-IMAHTVVIPSIHITRRSRAQGLLFFLE-ENKPSSKKPAREDLFKTCSIPGTPTATPVLYPLN

Parental  VESNSREDLDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGSEDLARVSPV-RCSKLTEV
          VESNSR.....R........R.S.S.LETLGSASTST.G..S......L.G.....R.......SK....
Retrocopy VESNSRKERSGRQKLGNV**RQSSSQLETLGSASTSTTGHWSVLPW--L*GAAEVRRLGLICAVSKVNRS

Parental  P-RVPVKPWAPDTTLPGIS-PPAVKEKR
          P.RVPVK.WAP.TT...IS..PAVKE..
Retrocopy P>RVPVKLWAPETTPSQIS<LPAVKEEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	0.34 RPM
SRP017611_kidney	0.10 RPM	0.00 RPM
SRP017611_liver	0.00 RPM	0.40 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_761 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_761 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000002502	1 retrocopy	retro_cjac_4145,
Dasypus novemcinctus	ENSDNOG00000019033	1 retrocopy	retro_dnov_2601,
Felis catus	ENSFCAG00000028197	1 retrocopy	retro_fcat_761 ,
Pteropus vampyrus	ENSPVAG00000007908	1 retrocopy	retro_pvam_567,
Rattus norvegicus	ENSRNOG00000046635	2 retrocopies	retro_rnor_639, retro_rnor_640,