RetrogeneDB ID: retro_fcat_22

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: D4:45041910..45042243(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000031200
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000004181
• Aliases: None
• Description: None

Sequence

>retro_fcat_22
CGGCGGCAGGGCTTGGAGGCCTATATCCAGGGTGTCCTGTACCTGAACCAGGATGTGCCCAAGGAATTACTGGAATTCCT
GAGCCTTCGGCACTTCTCCACAGACCTTAAGGCCAGCAACTGGGGCGCCTTGGGGGAGTTCCTGCCCAAGAACTGCAGCT
CCCAGCTCCACCACCGGCCTGTCATCAGCTTCTGCATGGATCCCTACGTTTGCATTCCATCCCCAGAGCCTCTGTCCAAC
ATGGTGGTGAATGGCGTGCTCCAGGGCCTCTATGGCTTCAGCACCAGCTCAGCTAAAGCCCAGTCCGAGACTCCCTGTCA
CCCTGCTCCTTTG

Alignment

ORF - retro_fcat_22 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.2 %
• Parental protein coverage: 57.51 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RRQGLEAYIQGVLYLNQDVPKELLEFLSLRHFSTDPKASNWGALGEFLPKNCSSQLHHRPVISFCMDPYV
          RRQGLEAYIQGVLYLNQDVPKELLEFLSLRHFSTD.KASNWGALGEFLPKNCSSQLHHRPVISFCMDPYV
Retrocopy RRQGLEAYIQGVLYLNQDVPKELLEFLSLRHFSTDLKASNWGALGEFLPKNCSSQLHHRPVISFCMDPYV

Parental  CIPSPEPLSNMVVNGVLQGLYGFSTSSAKAQSEAPCHPAPL
          CIPSPEPLSNMVVNGVLQGLYGFSTSSAKAQSE.PCHPAPL
Retrocopy CIPSPEPLSNMVVNGVLQGLYGFSTSSAKAQSETPCHPAPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	3.21 RPM
SRP017611_kidney	0.00 RPM	0.10 RPM
SRP017611_liver	0.00 RPM	0.51 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_22 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_22 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000004181	1 retrocopy	retro_fcat_22 ,
Pan troglodytes	ENSPTRG00000007155	1 retrocopy	retro_ptro_110,