RetrogeneDB ID: retro_fcat_202

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: A1:195156830..195157463(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BAK1
• Ensembl ID: ENSFCAG00000013657
• Aliases: None
• Description: BCL2-antagonist/killer 1 [Source:HGNC Symbol;Acc:949]

Sequence

>retro_fcat_202
ATGGCATCCGAGCAATGCCCAGGTCCTCCCAGGCAGGAGTGTGAAGAGACTGCCCCATCTGCTACTTCGGAGGAGTAGGT
AGCCTGGGACACCAAGGAGGTTTTCCGCAGCTATGTTTTTCACCATTAGCAGCAGGAGCAGGAGGCTGAGGGGGCAGCTG
TGCCTACTGACCCAGAAATGGTCACCTTGCCCCTAGAACCTAGCAGCACCATGGGGCAGGTGGGTCGGCAACTCACCATC
ACTGGGGACAACATCAACCAGCGCTACGATTCAGAGTTCCAGGCCATGCTGCAGCGCCTGCAACCCACAGCAGAGAACAC
CTATGATCTTTTCACCAAGATTGCCTCAAGTCGATTTGAGAGCGGCATCAACTGGGGCCGAGTGGTGGCTCTCCTGGGCT
TTGGCTACTGCCTGGCCCTCGACATCTACCAGCACGGCCTGACTGGCTTTCTGGGCCGGGTGACCAAACTGGTGGTTGAC
GTCATGCTGCGTCACTGCATTGCCGGGTAGACTGCACAGAGGGGCAGCTGGGTGGCAGCCCTGAACTTGGGAAATGGCCC
CATCCTGAACGTGCTGATAGTTCTGTCTGTGGTTCTGTTGGGCCAGTTCATGGTACGAAGATTCTTCAAATCA

Alignment

ORF - retro_fcat_202 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.1 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASGQGPGPPRQECEETAPSATSEEQVARDTEEVFRSYVFHRYQQEQEAEGAAAPTDPEIVTLPLEPSST
          MAS.Q.PGPPRQECEETAPSATSEE.VA.DT.EVFRSYVFH..QQEQEAEGAA.PTDPE.VTLPLEPSST
Retrocopy MASEQCPGPPRQECEETAPSATSEE*VAWDTKEVFRSYVFHH*QQEQEAEGAAVPTDPEMVTLPLEPSST

Parental  MGQVGRQLAIIGDNINQRYDSEFQAMLQRLQPTAENAYELFTKIASSLFESGINWGRVVALLGFGYRLAL
          MGQVGRQL.I.GDNINQRYDSEFQAMLQRLQPTAEN.Y.LFTKIASS.FESGINWGRVVALLGFGY.LAL
Retrocopy MGQVGRQLTITGDNINQRYDSEFQAMLQRLQPTAENTYDLFTKIASSRFESGINWGRVVALLGFGYCLAL

Parental  HIYQHGLTGFLGQVTKLVVDVMLRHCIARWIAQRGGWVAALNLGNGPIVNVLIVLSVVLLGQFVVRRFFK
          .IYQHGLTGFLG.VTKLVVDVMLRHCIA...AQRG.WVAALNLGNGPI.NVLIVLSVVLLGQF.VRRFFK
Retrocopy DIYQHGLTGFLGRVTKLVVDVMLRHCIAG*TAQRGSWVAALNLGNGPILNVLIVLSVVLLGQFMVRRFFK

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	3.21 RPM
SRP017611_kidney	0.00 RPM	4.64 RPM
SRP017611_liver	0.00 RPM	1.62 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_202 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_202 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000013657	1 retrocopy	retro_fcat_202 ,
Homo sapiens	ENSG00000030110	2 retrocopies	retro_hsap_2468, retro_hsap_942,
Gorilla gorilla	ENSGGOG00000022462	1 retrocopy	retro_ggor_761,
Macaca mulatta	ENSMMUG00000009104	1 retrocopy	retro_mmul_1130,
Nomascus leucogenys	ENSNLEG00000008351	1 retrocopy	retro_nleu_296,
Ochotona princeps	ENSOPRG00000001127	2 retrocopies	retro_opri_105, retro_opri_938,
Pan troglodytes	ENSPTRG00000018053	1 retrocopy	retro_ptro_652,