RetrogeneDB ID: retro_fcat_1326

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: C2:23413602..23414254(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000028721
• Aliases: None
• Description: None

Sequence

>retro_fcat_1326
CCCCCTAAGCTTGGGCACAAACAGGAACTCTTTCCAAAGTGCTGCATGCCAATTAAAATTGCTATTATTGCATTCTCTCT
GGCTTTTCTTTATATTCTTTGAGGGAAATAACTCACTCTTTGTAACTTTCCATCAACAGTATTTTATTAAATTTCAGTCC
TGGTCATCAACAAAGTCTTGCCAATGGTTTTCATCACCTTCTTGGTTCTGGTTTATTTGCCAGGTGTGATAGCAGCTGTT
GTACAGCTTCATAATGGAATCAAATATAAGAAATTTTCACATTGGTTGGGTAGATGGAAGTTAACAATAAAACAATTTGG
GCTTCTCAGTTTCATTTTTGCTGTACTGCAAACAATGTATGTTTATCCTGTCCAATGAGGCTATCCCACAGATACAAGCT
GATAAACTGGGCATGTCAACAGGTCCAACAAAATAAAGAGGATGCTTCAATTGAGCCTGAGGTTTGCAGAGTGGAAATTT
ATGTGTCTCTGGGAGTGACAGCACTTGCAATACTGGCTCTGTTAGCTGTGACGTCTATCCTTCTGTGAGCAGCTCTTTGA
TGTGGAGGGAATTTCACTATGTTGAGAGCACACTAGGATTTGTTGCCCTTCTGCTGGTCACAATACATGCATTGATTTGT
TCCTGAAATAAA

Alignment

ORF - retro_fcat_1326 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.21 %
• Parental protein coverage: 64.79 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  PTELQHKQDLFPKWRLPIKIAAIVSSLTFLYTL-LREIIHP-FVTSHQHYFYK-IPILVINKVLPMVSIT
          P..L.HKQ.LFPK...PIKIA.I..SL.FLY.L.LREI.H..FVT.HQ.YF.K.I..LVINKVLPMV.IT
Retrocopy PPKLGHKQELFPKCCMPIKIAIIAFSLAFLYIL<LREITHS<FVTFHQQYFIK<ISVLVINKVLPMVFIT

Parental  LLALVYLPGVIAAVVQLHNGTKYKKFPHWLDRWMLTRKQFGLLSFFFAVLHAIY-SLSYPMRRSYRYKLL
          .L.LVYLPGVIAAVVQLHNG.KYKKF.HWL.RW.LT.KQFGLLSF.FAVL...Y..LS.PMR.S.RYKL.
Retrocopy FLVLVYLPGVIAAVVQLHNGIKYKKFSHWLGRWKLTIKQFGLLSFIFAVLQTMY<CLSCPMRLSHRYKLI

Parental  NWAYQQVQQNKEDAWIEHDVWRMEIYVSLGIVALAILALLAVTSI-PSVSDSLTWREFHYIQSKLGIVCL
          NWA.QQVQQNKEDA.IE..V.R.EIYVSLG..ALAILALLAVTSI.PSVS.SL.WREFHY..S.LG.V.L
Retrocopy NWACQQVQQNKEDASIEPEVCRVEIYVSLGVTALAILALLAVTSI<PSVSSSLMWREFHYVESTLGFVAL

Parental  LLGTIHALIFAWNK
          LL.TIHALI...NK
Retrocopy LLVTIHALICS*NK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	0.34 RPM
SRP017611_kidney	0.00 RPM	3.50 RPM
SRP017611_liver	0.00 RPM	0.10 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1326 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1326 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000028721	1 retrocopy	retro_fcat_1326 ,