RetrogeneDB ID: retro_fcat_1051

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B4:85306616..85306997(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000008461
• Aliases: None
• Description: None

Sequence

>retro_fcat_1051
AGAGCTGGACATCCGGCTTGGGAGCAGGCACCTTCGTTTCACACGCAACCAAAGAGTGATTTAAAAATGGGTGATGTTGA
GAAGGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCATACTGTGGAAAAGGGAGGCAAGCACAAGACTGGACCAA
ATCTCCATGGTTTATTTGGGCGAAAAACAGGTCAAGCCCCTGGATTGTCTTACACAGATGCCAACAAGAACAAAGGCATC
ACCTGGGGAGAGGAGACATTGATGGAGTATTAGGAGAATCCCAAGAAGTACGTCCCTGGAACAAAAATGATCTTCGCTGG
CATTAAGAAGGCAGGGGAAAGAGCGAACTTGATAGCTTATCTCAAAAAAGCTACTAAGGAA

Alignment

ORF - retro_fcat_1051 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.08 %
• Parental protein coverage: 99.22 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KAGRPKRAGSAAVGARNCVDLKMGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFS
          .AG.P..............DLKMGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLH..............
Retrocopy RAGHPAWEQAPSFHTQPKSDLKMGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHXXXXXXXXXXXXXX

Parental  YTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKAGERADLIAYLKKATKE
          .....KNKGITWGEETLMEY.ENPKKY.PGTKMIFAGIKKAGERA.LIAYLKKATKE
Retrocopy XXXXXKNKGITWGEETLMEY*ENPKKYVPGTKMIFAGIKKAGERANLIAYLKKATKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	16.07 RPM
SRP017611_kidney	0.10 RPM	16.90 RPM
SRP017611_liver	0.00 RPM	10.31 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1051 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1051 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000008461	1 retrocopy	retro_fcat_1051 ,