RetrogeneDB ID: retro_etel_911

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_183788:5157..5412(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPA17
• Ensembl ID: ENSETEG00000007789
• Aliases: None
• Description: sperm autoantigenic protein 17 [Source:HGNC Symbol;Acc:11210]

Sequence

>retro_etel_911
CTTGAAGGACTGACACAAGAGATTCTGAGAGAGCAACCAGACAATATACCAGCTTTTACAGCAGCATACTTTGAGAACCT
CCTAGAGAAAAGAGAGAAAACCAATTTTGATCCAGCAGAATGGGGAGCTAAGGTAGATGATCACTTCTATAACAACCATG
CATTCAAGGAGCAGGAACCACTTGAGCAAGATGTGCCTGAAAAAGAAAAATCTCAGGAATCTGTGAATGAGGAAGAGACA
CCAGTCATAGCCTTA

Alignment

ORF - retro_etel_911 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.12 %
• Parental protein coverage: 86.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LEGLTRNL--REPDNIP-FAAAY--ELLENREKTNFDPAE-GAKVDDRFYNNHAFNEQEPPEKDVPEK-K
          LEGLT.......PDNIP.F.AAY...LLE.REKTNFDPAE.GAKVDD.FYNNHAF.EQEP.E.DVPEK.K
Retrocopy LEGLTQEILREQPDNIPAFTAAYFENLLEKREKTNFDPAEWGAKVDDHFYNNHAFKEQEPLEQDVPEKEK

Parental  SQESVNKEETPVTVL
          SQESVN.EETPV..L
Retrocopy SQESVNEEETPVIAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_911 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007961	1 retrocopy	retro_cjac_978,
Echinops telfairi	ENSETEG00000007789	1 retrocopy	retro_etel_911 ,
Homo sapiens	ENSG00000064199	1 retrocopy	retro_hsap_696,
Gorilla gorilla	ENSGGOG00000003757	1 retrocopy	retro_ggor_593,
Macaca mulatta	ENSMMUG00000008480	1 retrocopy	retro_mmul_2405,
Nomascus leucogenys	ENSNLEG00000007436	1 retrocopy	retro_nleu_2229,
Pongo abelii	ENSPPYG00000004017	1 retrocopy	retro_pabe_529,
Pan troglodytes	ENSPTRG00000004426	1 retrocopy	retro_ptro_500,
Tarsius syrichta	ENSTSYG00000008379	1 retrocopy	retro_tsyr_2091,