RetrogeneDB ID: retro_etel_862

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_177446:10914..11262(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000019042
• Aliases: None
• Description: None

Sequence

>retro_etel_862
GGTCTTATGGATTTCTCTATGAATACCAGCTTAATGGTGAACGGTGCCAAAGAGAGGGTGAAAGAGTGGATGTCCTGTGG
ACACCACCCAGGCCACATTGAAGGGTGGGGGTCAGCACTGGGCAGCAGCACCTGACAGGCCTTCTCCACAGAAGCCATGA
ATAAGGAACGAGAGTCCGCGTCTGCCACTGCTGGGCAAGACCACCTGACCCCCATCCCGGCATCCTCTGTGCCTCTGCCC
CCAGGAAAGCCAGCCCTACCTCAGACTGACGGGACCTCCTTTGGTTGTCCTTCTGGGTGCAAGGGGAAGCCCTCCGACCC
CCTGGAATGGACCCTGATGGATGTGCTG

Alignment

ORF - retro_etel_862 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.45 %
• Parental protein coverage: 50.92 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGSAPGSGTRQAFSVAAMNKEGGSASATTGPDSPS
          G......N.......AKERVKEW..CG.H.G..EG.GSA.GS.T.QAFS..AMNKE..SASAT.G.D...
Retrocopy GLMDFSMNTSLMVNGAKERVKEWMSCGHHPGHIEGWGSALGSST*QAFSTEAMNKERESASATAGQDHLT

Parental  PVPLP--PGKPALPG---TDGTPFGCPSGRKEKRRNPVEWTVMDVV
          P.P....P..P..P....TDGT.FGCPSG.K.K...P.EWT.MDV.
Retrocopy PIPASSVPLPPGKPALPQTDGTSFGCPSGCKGKPSDPLEWTLMDVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_862 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019042	1 retrocopy	retro_etel_862 ,