RetrogeneDB ID: retro_etel_650

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_130391:493..814(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COX7A2L
• Ensembl ID: ENSETEG00000011940
• Aliases: None
• Description: cytochrome c oxidase subunit VIIa polypeptide 2 like [Source:HGNC Symbol;Acc:2289]

Sequence

>retro_etel_650
AGGTTCAGGGGCCTCACCCAGAAGTTGGCAGGAGCAGGTGCTTTAGACCCTTAAAACCTCAGGGATTAAAGGCCATCATC
GCCACCGAAGTGCTGCCTATCGTATTTGCCACACCAACTAAGCAGCATGTTGACCCGGCCTACAATTAGGCTGGGAAAAA
CAAAGTCCCCGAGCTGCAGAAGTTTTTCCAAAAATCTGCCCGTCCACCTGATGCAGGGCCTGCCTGACCAGAGGCGGTGT
AGGACTAGCAGGGTGCGGACACTGGGTGGGACATCTACGGCCTCATTGCCCTCTGTGGGGCTTCCTGGCCCCCGGAACAA
A

Alignment

ORF - retro_etel_650 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.16 %
• Parental protein coverage: 97.35 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KFSGFTQKLAGAGAFDAYN-PQGLKPIIATEAPPILFATPTKLTADPAYDYAGKNKV-PELQKFFQKSDG
          .F.G.TQKLAGAGA.D..N.PQGLK.IIATE..PI.FATPTK...DPAY..AGKNKV.P....F...S..
Retrocopy RFRGLTQKLAGAGALDP*N<PQGLKAIIATEVLPIVFATPTKQHVDPAYN*AGKNKV>PSCRSF---SKN

Parental  VPVHLKRGLPDQMLYRTTMALTLGGT-IYCLIALYMAS-QPRNK
          .PVHL..GLPDQ...RT....TLGGT.IY.LIAL..AS..PRNK
Retrocopy LPVHLMQGLPDQRRCRTSRVRTLGGT<IYGLIALCGAS>GPRNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_650 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014705	1 retrocopy	retro_cjac_1492,
Echinops telfairi	ENSETEG00000007654	1 retrocopy	retro_etel_2078,
Echinops telfairi	ENSETEG00000011940	1 retrocopy	retro_etel_650 ,
Homo sapiens	ENSG00000115944	1 retrocopy	retro_hsap_825,
Gorilla gorilla	ENSGGOG00000010739	1 retrocopy	retro_ggor_674,
Macaca mulatta	ENSMMUG00000016278	1 retrocopy	retro_mmul_110,
Mustela putorius furo	ENSMPUG00000008875	1 retrocopy	retro_mputfur_97,
Mus musculus	ENSMUSG00000024248	2 retrocopies	retro_mmus_32, retro_mmus_926,
Nomascus leucogenys	ENSNLEG00000016666	1 retrocopy	retro_nleu_258,
Oryctolagus cuniculus	ENSOCUG00000027189	3 retrocopies	retro_ocun_1617, retro_ocun_1781, retro_ocun_28,
Otolemur garnettii	ENSOGAG00000016029	1 retrocopy	retro_ogar_114,
Pan troglodytes	ENSPTRG00000011865	1 retrocopy	retro_ptro_575,
Ictidomys tridecemlineatus	ENSSTOG00000012922	1 retrocopy	retro_itri_21,